Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2446 ATGGATGGGGAAAATAGATTATCTCCCAATAAATTGGTACAGTGTCGTATATGTCATGATGAGGATGAAGACTCAAACATGGAGGCTCCCTGTTCTTGTAGTGGCAGTTTGAAGTATGCGCATCGAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTATCTGTGAGATTTGCCAACAGCAGTTCAAGCATGGTTATACAGCGCCGCCTCCATTATTCCATTATGGCAGTTCCCCATTGAATTTTAGAGGTAACTGGGAGATATCCCGAAGGGACCTGCAAAATCATCAGTTTATAGAAATGTTTGCTGCTAATCGCGAATTCTCAGACACTAATGAGGAATACTCAGTCCCCTCAACAGGGAGTCTGGTTTGCTTTCGCATGGTTGCAATTATTTTTATCGCTCTTCTCGTTTTACGCCATACCCTTCCAATTATACTCAGTGGAGCTGGGGAATACTCATTGACTCTTTATATGTTATTGGTCATGAGAACAATTGCAATACTTTTACCTGTATGTATAATGGTTAAGGCATTTACCATTATCCAACGGCGACGATACCAGGATCATTACTCCTCTATTCTGCAACATGAAGAGAGTGAGTTGGAACAGCCTCAGTCTCGTGTCATTCATATCTTATTTTACATGGCTGTTAGGGTTTACCACAACCATTTTGCTTTGAGTTTGAGATCAACTATAGAAGTAGAGTGGAGTGAAATCAGAAGATATGTTGCAATGGAATCTTGTATTGATCAAAATATTCTCGAGGTTATGAAAAGCAAATCTAAATCTGGAAATTTTATAACATCATGA 819 0.3932 MDGENRLSPNKLVQCRICHDEDEDSNMEAPCSCSGSLKYAHRKCVQRWCNEKGDTICEICQQQFKHGYTAPPPLFHYGSSPLNFRGNWEISRRDLQNHQFIEMFAANREFSDTNEEYSVPSTGSLVCFRMVAIIFIALLVLRHTLPIILSGAGEYSLTLYMLLVMRTIAILLPVCIMVKAFTIIQRRRYQDHYSSILQHEESELEQPQSRVIHILFYMAVRVYHNHFALSLRSTIEVEWSEIRRYVAMESCIDQNILEVMKSKSKSGNFITS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2446 272 SMART ringv_2 14 61 IPR011016 GO:0008270
Lele05g2446 272 SUPERFAMILY RING/U-box 12 65 - -
Lele05g2446 272 Pfam Protein of unknown function (DUF3675) 67 180 IPR022143 -
Lele05g2446 272 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 190 IPR033275 -
Lele05g2446 272 FunFam Zinc finger family protein 3 70 - -
Lele05g2446 272 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Lele05g2446 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 70 IPR013083 -
Lele05g2446 272 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Lele05g2446 272 CDD RING_CH-C4HC3_MARCH 15 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2446 Lele-ChrLele05 40165098 40168697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2446 1 61 C3H Transcription Factor Family AT2G37950 42.188 3.42e-08 50.8