Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2436 ATGGCAGATGCTGAGGATATTCAACCTCTTGTCTGTGATAATGGGACAGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCTAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAGGATGCATATGTTGGTGATGAGGCACAATCTAAGAGGGGTATTCTGACTCTCAAGTACCCAATTGAGCATGGAATCGTTAGCAACTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTTGCCCCAGAAGAGCACCCGGTTCTTTTAACTGAGGCTCCACTTAATCCCAAGGCTAACCGTGAGAAGATGACTCAAATTATGTTTGAGACTTTTAACACCCCTGCTATGTATGTAGCCATTCAAGCTGTTCTTTCACTGTATGCTAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACAGTTCCTATCTATGAGGGTTATGCTCTCCCTCATGCCATCCTTCGTCTTGACCTGGCTGGTCGTGACCTCACTGAATACATGATGAAAATTCTGACTGAACGTGGGTATTCTTTTACCACCTCAGCAGAGCGGGAAATTGTTAGAGATGTGAAGGAAAAGCTAGCTTACATTGCCCTTGACTATGAGCTAGAGCTAGAGACGTCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGTCAGGTCATCACTATTGGTGCTGAACGTTTCAGATGTCCAGAGGTTTTGTACCAACCATCTTTGATTGGAATGGAAGCAGCAGGCATTCATGAGACAACATACAACTCCATTATGAAGTGTGATGTTGATATTAGGAAAGATTTGTATGGTAACATTGTCCTTTCAGGAGGTTCAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAGATCTCTGCATTAGCCCCAAGTAGCATGAAGATCAAGGTGGTTGCACCACCTGAGAGAAAGTACAGTGTCTGGATAGGTGGTTCAATTTTGGCATCTCTGAGCACCTTCCAGCAGGGCAGATGTGGATTGCAAAGGCAGAGTATGACGAATCTGGACCATCCATTGTGCATAGGAAATGCTTTTAAAATGCGAGGATACGGTATGATCCTGAGGAAGAATTGCAGCTTGCAGCCTATTCAATGTAGCTTTGTTGCCCTTTCATGTTCTCATGTTGGAGTGATGACTGAGACGGCGGGGATTTTATTTTCTCTTTTTCACCATGGTCCAATTCTTTTTAGTATTGTATACTTTGACAAGATTTTGAATGTTAACTCTGTCTGA 1335 0.4472 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYMMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYELELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLYQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQGRCGLQRQSMTNLDHPLCIGNAFKMRGYGMILRKNCSLQPIQCSFVALSCSHVGVMTETAGILFSLFHHGPILFSIVYFDKILNVNSV 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2436 444 FunFam Major actin 260 340 - -
Lele05g2436 444 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lele05g2436 444 Pfam Actin 5 356 IPR004000 -
Lele05g2436 444 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lele05g2436 444 PRINTS Actin signature 28 37 IPR004000 -
Lele05g2436 444 PRINTS Actin signature 238 254 IPR004000 -
Lele05g2436 444 PRINTS Actin signature 63 85 IPR004000 -
Lele05g2436 444 PRINTS Actin signature 117 130 IPR004000 -
Lele05g2436 444 PRINTS Actin signature 142 161 IPR004000 -
Lele05g2436 444 PRINTS Actin signature 51 62 IPR004000 -
Lele05g2436 444 Gene3D Actin; Chain A, domain 4 182 273 - -
Lele05g2436 444 PANTHER ACTIN 9 360 IPR004000 -
Lele05g2436 444 FunFam Actin, muscle 182 273 - -
Lele05g2436 444 FunFam Actin, alpha skeletal muscle 3 164 - -
Lele05g2436 444 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lele05g2436 444 Gene3D - 10 356 - -
Lele05g2436 444 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lele05g2436 444 Gene3D - 140 340 - -
Lele05g2436 444 SUPERFAMILY Actin-like ATPase domain 149 356 IPR043129 -
Lele05g2436 444 SMART actin_3 7 380 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2436 Lele-ChrLele05 40056410 40058291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2436 1 356 Cytoskeleton Gene Families AT3G12110 96.348 0.0 718