Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2409 ATGCTTCTCCGTCCTCGTAAGCACGAGTTTCCTTGCCAAAGAATGTCTACAAAGATCCAGATGATGGCCGGCAGCCATTTTTGCTTGAGTTGGAGTTTGTTCAATGCCTTGCTAATCCCACCTAAATTCACTGTATGCTTTTTTCCTTACATTGCTTTAACTGCTTTGGGTTCAATGTTTTGCCAATCCCATGATGAAGCATTCATTGGATACTTGCAGTACCTTCAATATTGGCAACGTCCTGAGTACATCAAATATATCATGTATCCTCATTGCCTTTTCTTTCTCGAACTTCTTCAGAATGCAAATTTCCGAAATGCAATGGCACATCCTGGCAATAAGGAACTTACACATAGACAACAATTTTACGTCTGGAAGAACTATAGGAACAATAGGTTGAAGCACATTTTACCAAGGTCACTCCCTGAATCTAGCCCCACACCCGCACCTCCTTCGGCTGCCTCTGCTCCATCTCAGCTGGCAGTGCCTTCTTTGCCACCAGTACCAGCTGCAAATGTTCCGGTAACAGTATCATCTGCTCAGGTTCTTTCTCCAATGCCAGATGGTATGCCGCCTGGATCTGCCCTTCCGGAAAATGATATGAGGAATCCTGCACTTGATAGGAGGAAGAGAAAGTAA 639 0.4429 MLLRPRKHEFPCQRMSTKIQMMAGSHFCLSWSLFNALLIPPKFTVCFFPYIALTALGSMFCQSHDEAFIGYLQYLQYWQRPEYIKYIMYPHCLFFLELLQNANFRNAMAHPGNKELTHRQQFYVWKNYRNNRLKHILPRSLPESSPTPAPPSAASAPSQLAVPSLPPVPAANVPVTVSSAQVLSPMPDGMPPGSALPENDMRNPALDRRKRK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2409 212 MobiDBLite consensus disorder prediction 139 161 - -
Lele05g2409 212 Pfam SOH1 63 128 IPR008831 GO:0003712|GO:0006355|GO:0016592
Lele05g2409 212 MobiDBLite consensus disorder prediction 182 212 - -
Lele05g2409 212 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 64 212 IPR008831 GO:0003712|GO:0006355|GO:0016592
Lele05g2409 212 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 19 125 IPR038089 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2409 Lele-ChrLele05 39810258 39812382 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Lele05g2409 Med31 1.3e-20 No_clan