Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2358 ATGGGTTCTGTTTGTGGTTGTTTGAGTGTTGAGAATCTTGAAGATTATGTAAATCCAAATAGTTCTGTATATAGAAATTGCATGTGCTTCAGTTGCTTCATACATAACTTTTTGAATGTGGGGGCAGCATCTATGACTTCTACGGCATCACTGGATAATTCATTATCAGACATGTACCGTGCTCCTCCACATCCCTTGCCATATGATGCAGACCCCAGGTATTTTCTCTCACAACGTGATGGACTAGTTTCAAGATGTGAGAAGGGTTCAAGTCATTCAAATGAGGAATCACAACCTCTAAGAAGTGATATAGATGTGGATTCAGAATCTTTGAATATGGGTGACAAATGGAATGAACGTGCCTTTGAAAATGGATCAAAGGACTACCTTTCTAAGTCCTCATTAAGACTTTCATCTGCAAAATTTACAACTGGAACTGGGGCTGTCTATGCATTGTTAGAAGATGAGGATGTTTGTCCAACATGTCTTGAAGTTCTGAAAAGGTTAGACGTTTCAATCAGTAAAGTTGTTGATGCTGGCAAATTCTTTATTAACAAAACAGGACCTTTTGAAGATTCTGATGGTTCTACAATATTTCTTTTGCTTGCAGAATATACCCGAGAGAATCCAAAAATAATGACAAAATGCTCTCACCATTTTCATCTTGGTTGCATCTATGAGTGGATGGAGAGAAGCGAAAACTGTCCAGTGTGTGGGAAGGTCATCATGATTCATGAACCCCCATATGGCTTCATTAAAAAAAGAAAAAGAAATTCGAGATGGAATTTGATGAAACGCCATAATCCTTTCCAAGAGGCTTGTGTTGCTGATGAAGCCAGCACCACCCAGATGCAAAAAGCAAAAGGGAGAATGAATACAAGGTGTAGACATTGTGAATACTACAGATTAAGTTCTTGTCTTCTACAGCAAGCGTATTACTTTTCTTAA 948 0.3829 MGSVCGCLSVENLEDYVNPNSSVYRNCMCFSCFIHNFLNVGAASMTSTASLDNSLSDMYRAPPHPLPYDADPRYFLSQRDGLVSRCEKGSSHSNEESQPLRSDIDVDSESLNMGDKWNERAFENGSKDYLSKSSLRLSSAKFTTGTGAVYALLEDEDVCPTCLEVLKRLDVSISKVVDAGKFFINKTGPFEDSDGSTIFLLLAEYTRENPKIMTKCSHHFHLGCIYEWMERSENCPVCGKVIMIHEPPYGFIKKRKRNSRWNLMKRHNPFQEACVADEASTTQMQKAKGRMNTRCRHCEYYRLSSCLLQQAYYFS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2358 315 SUPERFAMILY RING/U-box 204 245 - -
Lele05g2358 315 Pfam RING-H2 zinc finger domain 209 238 IPR024766 GO:0008270
Lele05g2358 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 246 IPR013083 -
Lele05g2358 315 SMART ring_2 159 238 IPR001841 -
Lele05g2358 315 ProSiteProfiles Zinc finger RING-type profile. 159 238 IPR001841 -
Lele05g2358 315 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 202 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2358 Lele-ChrLele05 39146254 39151421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2358 1 248 C3H Transcription Factor Family AT5G15790 46.125 5.34e-73 223