Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2349 ATGGAGCAGGAACACGAAGAGCATGAAGTGTACGGAGCCGATATCCCCGATGATGCGGAGATGGATGCAGATTTCAGAGTTGAGGAAGATGAAGACCAAGAAGGAGACCAACTTGACCCCAATCACTCTAATAAGGACCTGGAGGATATGAAGAAGAGGCTCAAGGAAATTGAGGAAGAAGCTAATGCCCTCCGTGAAATGCAGGCTAAGGTTGAGAAAGAGATGGGTGCTGTTCAAGATTCAAGTGGTTCTTCAGCAAGTCAAGCTGAGAAGGAGGAAGTGGATTCCCGGTCAATCTATGTTGTTGTATTTTTATTCTCTGTACTTGATATCTGTGCTGAGGTTGACTATGGATGTACACCTGAAGAAGTCCAGCAACATTTTCAGTCTTGTGGAACTGTGAACAGAGTGACGATATTGACAGACAAATTTGGTCAACCAAAAGGATTCGCTTATGTTGAGTTTGTTGAGGTTGATGCCGTTCAGAATGCTCTCTTGTTGAATGAATCAGAGCTGCATGGTCGTCAATTGAAGGTCTCTGCTAAGCGTACAAATGTTCCTGGAATGAAACAGTATCGTGGAAGAAGACCTATGGGTTTTCGACCTAGAATGCCTTACATGCCTTCTCCATTCTATCCTCCATATGGTGGTTATGGGAGGTTTCCGAGGTATAGGCGTCCAACGCGTTACAGGCCATACTAG 702 0.4487 MEQEHEEHEVYGADIPDDAEMDADFRVEEDEDQEGDQLDPNHSNKDLEDMKKRLKEIEEEANALREMQAKVEKEMGAVQDSSGSSASQAEKEEVDSRSIYVVVFLFSVLDICAEVDYGCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPMGFRPRMPYMPSPFYPPYGGYGRFPRYRRPTRYRPY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2349 233 MobiDBLite consensus disorder prediction 16 36 - -
Lele05g2349 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 178 IPR000504 GO:0003723
Lele05g2349 233 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 19 218 - -
Lele05g2349 233 Gene3D - 14 191 IPR012677 -
Lele05g2349 233 CDD RRM_II_PABPs 98 180 - -
Lele05g2349 233 SMART rrm1_1 102 180 IPR000504 GO:0003723
Lele05g2349 233 MobiDBLite consensus disorder prediction 37 68 - -
Lele05g2349 233 SUPERFAMILY RNA-binding domain, RBD 115 210 IPR035979 GO:0003676
Lele05g2349 233 MobiDBLite consensus disorder prediction 1 68 - -
Lele05g2349 233 MobiDBLite consensus disorder prediction 1 15 - -
Lele05g2349 233 Coils Coil 44 77 - -
Lele05g2349 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 184 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2349 Lele-ChrLele05 39048813 39061558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2349 115 180 Eukaryotic Initiation Factors Gene Family AT2G36660 32.857 2.47e-06 46.2