Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2344 ATGCCGGAGATGATGGCGCTGAATGTTGCAGCTAATTTCAACTCCAACGACGCCGGCGTTAATGGTGGTCATCAGTTCGGCGACACCACGCTCACCAAAGTGTTTGTTGGTGGATTGGCTTGGGAGACTCCCAAGGATGCCATGAGAGAGCATTTCCAGAAGTACGGCGAGATCCTCGAGGCCGTTATTATCTCCGATAAGGCCACCGGCAGATCCAAGGGCTATGGCTTCGTGACATTTAAGGAAGCTGAAGCTGCTAAGAAGGCTTGTGAGGATCCTACACCGATCATCAATGGCCGCCGAGCCAACTGCAATCTGGCTTCGCTAGGCGCGCGACGCCCTAGGTCCACCAACACTTCACCGCCTTGTCAACAAGGTCTGAAATTGTGGTGTTATCAAAGTAGGATCGAACGGTGGAGGACAAAGGAAAGCCCAAAGCGCACCACCCCCGCCAGCCAATCAAGTCCCGTGGTATTATCCGGTGGGGGCAACTGCTTCACATTTCCATCGTCAACACCATCAACCAGTTCCTCTCTATGGGAGCTAAGCTACCCTGGCAGTGGGCCCTACATGAATGGTTACTACTCTCCAATGTACCCGAGCCAGGCTATGGTAGGTGGGAACACATTGATGCCGATGTACCCTCCTTATCAGTACCGTCAAACGCCCACGATGGGCCTACCTTCTCACATATTCCAGCCAACAACAGCGGGGCACGTGGTCATCATGTCGAAGCCCGCGTCCATCACTCCCAACACAGGTGCGTCACATGGTAACATGCCCAACCCCAGTCAATGTCTGACGGATGTGTCACCAACCCCAACGTGA 828 0.5399 MPEMMALNVAANFNSNDAGVNGGHQFGDTTLTKVFVGGLAWETPKDAMREHFQKYGEILEAVIISDKATGRSKGYGFVTFKEAEAAKKACEDPTPIINGRRANCNLASLGARRPRSTNTSPPCQQGLKLWCYQSRIERWRTKESPKRTTPASQSSPVVLSGGGNCFTFPSSTPSTSSSLWELSYPGSGPYMNGYYSPMYPSQAMVGGNTLMPMYPPYQYRQTPTMGLPSHIFQPTTAGHVVIMSKPASITPNTGASHGNMPNPSQCLTDVSPTPT 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2344 275 SUPERFAMILY RNA-binding domain, RBD 31 119 IPR035979 GO:0003676
Lele05g2344 275 CDD RRM_RBM24_RBM38_like 32 107 - -
Lele05g2344 275 FunFam Putative RNA-binding protein ARP1 26 115 - -
Lele05g2344 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 91 IPR000504 GO:0003723
Lele05g2344 275 MobiDBLite consensus disorder prediction 251 275 - -
Lele05g2344 275 Gene3D - 26 113 IPR012677 -
Lele05g2344 275 PANTHER BOULE-RELATED 21 263 IPR037366 -
Lele05g2344 275 SMART rrm1_1 33 105 IPR000504 GO:0003723
Lele05g2344 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2344 Lele-ChrLele05 39001179 39003611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2344 28 108 C2H2 Transcription Factor Family AT2G19380 41.975 7.11e-16 75.5