Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2315 ATGGCCACTTCCCAGCATCGCTGCGTTTTTGTCGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTAGTATCATTCAGATTAGTCATCGACAGAGAAACTGGAAAACCAAAAGGTTATGGGTTCTGTGAATACAAGGATGAAGAGACAGCTCTAAGTGCCCGTCGTAACCTTCAGGGCTATGAGATTAATGGGCGGCAGTTGCGTGTTGATTTTGCTGAAAATGACAAAGGTGCTGACAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGATTGGCAGCAAATTTTGACCCTCAGAAACAAGTAAGTGGGCCAGTTGTTCATGGGGAAGCTGGCCGCAATCAACCTATCGGTCTTCATATTGCTATAACAGCTGCAACTGTCATGGCAGCAGCTCTAGGAGGGCCTCAATCTGGCATCCAGTCAAATCAAAATGGTTTGCAGGTTCAGTCAGGATTGACACATGACCCTTTAACTCTGCATCTGGCCAGACTATCCAGGAATCAGCTGATTGAAGTTATCTCTGACCTCAAGGCAATGGCTGCACATAACAAGGAATTAGCTCGTCAGTTGTTACTTTCTAGACCGCAGTTGCCTAAGGCTCTTTTTCAGGCACAGGTGATGCTAGGAATGGTGACCCCGCAAGTGTTACAAATGCCAAACCTTAGGCAAGTTGCAGGTGAAACCTCACAGCCTCCAGTAGATGAAAGCCAGCTAGGTCAGTTGGCAGTGCTTCAATCACTATCTGGGCTGCCTTCTCATGCACAGATAAAGTTGCAGTCTAGCTTGATGCCCACTATTCAAGAAACTCAAGCCAGTGCTTTACATCATAATTCTTTGGTTCCTAATCAATTAGCTGCTGCACATTCAAAGCCTCCTTTGCAGCCTCGAATGCAGCTTCCACAGCATCCAAGCAACCTGGTGGTACAGCTGGGCACATTGCCAGGGCATTCTAGTTCATCACTTCCTTCTCTGCGGCCTCAGTCTCAATTCGGTTTGCCTGTTAGACCAACAAATCAACTGGCAACTTCAACTTCTCTGAATCAGCAAATGCATTTGCTACAGCAATCAGGGCAGATTGGTAACTCAAGTGTAGGACAAAATATTCGGATGATTCCTGCAGATGCAGGCTTTCAGCCTGGCCTGTCCATATCATCAGGTATTCCTCAGTCAATTGGTAGGGAAGCTGACAGATCAGCTAAAGTTGTTGAAGATTCTAATTGGGCCAAGAAAAGTAGGACTTATTCAAATATTGCTCTTGGATCAGGAGAGAAAACTAATGAGCCTTCAGAACCATTTAGCCACCCTTCAAAGCTGATTAAATTGGATGATGGAAGGAGCTCTTCTTTCCCTGCAGGAGTCAGAAATGTACCCGTTTCCAAGGGATCTTCCCAAGTTCTTGGAAGTGTGTCATTGCCTGTAAATGCAACTTCCAAATCAGAAGCACGATATCCTGAGCAACAAGCCTCTCAGGCTCAAGTTCCACCTGACATGGAATCGGTATTACTGCAACAAGTATTGAGTCTAACGCCGGAGCAATTGAGTTCCTTGCCACCGGAGCAGCAACAGCAGGTTTTACAGCTTCAGCAGTCTCTCCGGCGAGACCAGATCCAGCCCTCATAG 1653 0.467 MATSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLAANFDPQKQVSGPVVHGEAGRNQPIGLHIAITAATVMAAALGGPQSGIQSNQNGLQVQSGLTHDPLTLHLARLSRNQLIEVISDLKAMAAHNKELARQLLLSRPQLPKALFQAQVMLGMVTPQVLQMPNLRQVAGETSQPPVDESQLGQLAVLQSLSGLPSHAQIKLQSSLMPTIQETQASALHHNSLVPNQLAAAHSKPPLQPRMQLPQHPSNLVVQLGTLPGHSSSSLPSLRPQSQFGLPVRPTNQLATSTSLNQQMHLLQQSGQIGNSSVGQNIRMIPADAGFQPGLSISSGIPQSIGREADRSAKVVEDSNWAKKSRTYSNIALGSGEKTNEPSEPFSHPSKLIKLDDGRSSSFPAGVRNVPVSKGSSQVLGSVSLPVNATSKSEARYPEQQASQAQVPPDMESVLLQQVLSLTPEQLSSLPPEQQQQVLQLQQSLRRDQIQPS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2315 550 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Lele05g2315 550 MobiDBLite consensus disorder prediction 397 417 - -
Lele05g2315 550 MobiDBLite consensus disorder prediction 523 550 - -
Lele05g2315 550 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 546 - -
Lele05g2315 550 Gene3D - 1 115 IPR012677 -
Lele05g2315 550 FunFam Cleavage stimulating factor 64 1 116 - -
Lele05g2315 550 Gene3D - 506 548 IPR038192 -
Lele05g2315 550 SUPERFAMILY RNA-binding domain, RBD 4 102 IPR035979 GO:0003676
Lele05g2315 550 Pfam Transcription termination and cleavage factor C-terminal 512 544 IPR026896 GO:0031124
Lele05g2315 550 CDD RRM_CSTF2_CSTF2T 9 83 - -
Lele05g2315 550 FunFam Cleavage stimulating factor 64 155 230 - -
Lele05g2315 550 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lele05g2315 550 MobiDBLite consensus disorder prediction 429 456 - -
Lele05g2315 550 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lele05g2315 550 MobiDBLite consensus disorder prediction 429 443 - -
Lele05g2315 550 MobiDBLite consensus disorder prediction 82 115 - -
Lele05g2315 550 Pfam Hinge domain of cleavage stimulation factor subunit 2 163 228 IPR025742 -
Lele05g2315 550 Gene3D - 154 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2315 Lele-ChrLele05 38339860 38346712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2315 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.79e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2315 05 38339860 38346712 Lele07g2341 07 28420360 28428527 hybridization
Lele05g2315 05 38339860 38346712 Lele08g2203 08 27379880 27384350 hybridization