Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2299 ATGGAGTGGTGCTCCGACAACTCTCCTATGCCGGGAGCTACAGGTAGAGCCCTTTTCACTCTCTCCCTAAACTCCAACCTCTCTACGTTTGCACGCTTATCTCATGGCCACACCATTCCATTTCTCAAACTGTCTGCAAGACCCAGTAAGGTTTTCCCAGGGTTTAGGCACCTCTGCTCTGTCGCCTCCACCGCCACGCCCACCGTTCCCGACACGACGGAGTCTATTGATCCTGACCAAATCAAGCACTCAATTCTTCTTGAGAGACTCAGATTCAGGCACCTTAAGGACTCTGCTAACACCCCAGAAATCAAGAATTCGAGGAAATCAGTTGCTATCTCTGAGAAGGGTCGTGAGAATGAGGGGAAGAAGTCAAAAAGAAGAAATTGGTCGGAAGTTTTGAGGAGTTGGGCCTCAGCGATGAGTGTGTCGTTTTGGGATCTCATACTGGTTCTGGGTTCTGGCAAGACTCTTGCTTACATGCTTCCCCTTGTTCAGTTGCTTAGACGGGATGAACAATTGAATGGACTGAATATGAAGCCCAGGCGTCCCCAAGCTGTTGTGCTATGCCCTACAAGGGAGTTGTCTGAGCAGGTATTTCGAGTTGCAAAATCTATCATCCACCATGCAAAATTAAGGTCTACAATAGTAAGTGGGGGTGGCCGTCTCAGGCCTCAGGAGGATTCATTAAATAATCCCATTGACTTGGTTGTTGGTACTCCGGGCAGAATTCTGCAGCACATTGAGGAAGGCAACATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGGGGTTTTGGGGCTGATATACGGAAGTTTATTGTCCCCCTAAAGCATCGTTCATTAAAACCTGATGGCCTAGGTTTTCAGACTATCTTGGCAGTGCAAAAGCTGGTTGATGTGGAGTTTCAAGGCGTTGTGCATCTACGAACATCAACACTACATAAAAAGATTGCTTCTGCTCGTCATGACTTTATTAAGCTGTCAGAAGGCTGGAACAAAAGAGAAACTTTTAGAACAGTTGGGGAATTGTGCCTCTTTGGTGTATATGCCACAAAACTTCATGACTTTGTTCTGGAGCCAAGCCTGGCAAAGGGGAATAGAGTGATGGTTTTCGGCAATACATTGGATTCTAGCCGTGCTGTGGATAATTTTCTCAGTGAAAATCAGATATCTACTGTCAATTACCATGGAGAGGTACCTGCAGAACAAAGGGTTGAAAACCTCAACAAGTTTAAAAGTGATGAAGATGATTGCCCTACATTAGTTTGCACAGACTTGGCTGCTAGGGGTCCGGATTTGGACGTCGATCGTGTTATCATGTTTGATTTTCCCTTGAACTCTATTGATTACCTTCACCGCACTGGTAGAACAGCTCGTATGGGTGCAAAAGGGAAAGTAACTAGCTTGGTGGCAAAAAGAGACACAACCTTGGCCACTCGAATAGAAGAAGCAATAAGGAAGAATGAGAGCTTGGAGGCTATCAGTAAAGAAAGTCTTGGGAGGGAAACTGCTAGAACCCAAATAACTCAGCAGAAGGGAAAGAATTCCAAATTGGTAAAGGTTTCCAGAACAAAAAACACTTCTACTGTCCGTGCCACTTCCAGAAAAACACCGAAGAAGCCCTCTGCATTAAAAGTATCTGAAAGTTCTTCTAGTGTTAACACTGGTTCTAGAAAAGCATCCCAACCATTAAAATCAGCAAAAGCAGGAGATCAGGTGGAGATGCATCAAGATACAAAAGTTGCCCTTCATCCTATGGGACAGTTTAGCTGTTCAAGGTTTTCCCTAAAGCTAAAGTAG 1827 0.4483 MEWCSDNSPMPGATGRALFTLSLNSNLSTFARLSHGHTIPFLKLSARPSKVFPGFRHLCSVASTATPTVPDTTESIDPDQIKHSILLERLRFRHLKDSANTPEIKNSRKSVAISEKGRENEGKKSKRRNWSEVLRSWASAMSVSFWDLILVLGSGKTLAYMLPLVQLLRRDEQLNGLNMKPRRPQAVVLCPTRELSEQVFRVAKSIIHHAKLRSTIVSGGGRLRPQEDSLNNPIDLVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGADIRKFIVPLKHRSLKPDGLGFQTILAVQKLVDVEFQGVVHLRTSTLHKKIASARHDFIKLSEGWNKRETFRTVGELCLFGVYATKLHDFVLEPSLAKGNRVMVFGNTLDSSRAVDNFLSENQISTVNYHGEVPAEQRVENLNKFKSDEDDCPTLVCTDLAARGPDLDVDRVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKRDTTLATRIEEAIRKNESLEAISKESLGRETARTQITQQKGKNSKLVKVSRTKNTSTVRATSRKTPKKPSALKVSESSSSVNTGSRKASQPLKSAKAGDQVEMHQDTKVALHPMGQFSCSRFSLKLK 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2299 608 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 153 505 - -
Lele05g2299 608 SMART helicmild6 388 470 IPR001650 -
Lele05g2299 608 Gene3D - 148 307 IPR027417 -
Lele05g2299 608 CDD SF2_C_DEAD 373 479 - -
Lele05g2299 608 SMART ultradead3 130 337 IPR014001 -
Lele05g2299 608 Pfam DEAD/DEAH box helicase 153 287 IPR011545 GO:0003676|GO:0005524
Lele05g2299 608 Gene3D - 359 580 IPR027417 -
Lele05g2299 608 Pfam Helicase conserved C-terminal domain 372 470 IPR001650 -
Lele05g2299 608 MobiDBLite consensus disorder prediction 103 126 - -
Lele05g2299 608 MobiDBLite consensus disorder prediction 505 582 - -
Lele05g2299 608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 361 509 IPR001650 -
Lele05g2299 608 CDD DEADc 153 282 - -
Lele05g2299 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 487 IPR027417 -
Lele05g2299 608 MobiDBLite consensus disorder prediction 509 545 - -
Lele05g2299 608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 301 IPR014001 -
Lele05g2299 608 MobiDBLite consensus disorder prediction 552 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2299 Lele-ChrLele05 38034454 38039378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2299 153 492 Eukaryotic Initiation Factors Gene Family AT3G19760 28.367 1.35e-25 107