Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2212 ATGTTTCCAGTACCAGCTTCCCTAGATGCCTCACATGGCCCACTTCGTAATCAACTAAGTCAATATGAGACCATAGTGATGGATGCAGCTGAGCCGAGTTTTAGGGATAACTATAATGGTGTTGAAGAGATGTCAAATCCTAATGCAAGAGCATTTTATGACATGTTAAGTGCTGCACAACAACCTTTGTGGGAAGGTTGTGAAGAGGAATCTCAACTTTCAGCTAATGGCCCATTTTTTTTTCATAAAAGGAAAGTAGTAGTAGTAATGGAAGAACATCGGTTAGTGAATAGAGGATGGATCTTGTGCAAAAATTCTAGTGTAATCAAGAATTTTGAACATGGGAGACTGGAACTAGCTAACGTACATGCTACGAGCTTCAGATCAAAAGAACTTGTAGGGGAAGTGGAGAGTAGCAATGTAGAAGACAACACTACTATGGAGGCGGAAGCATTAGAAAGCTTGTGTGCTAATGAGATAAGTAGAAGAAGAGAGCTTGAAGAACTATTGGCTACGGAAAAGCAAGAATTACAAAACCTGAAAGATCAACAAGATGAAATCATGGGCAAACTGCAAATGATCCAAGATCAAAGTTCAGTACTTAATGGCCAATTTGTTGAGTCTGAGACTGTGGTGAGAGAGTTGGAGGAGAAAATTTTATCAGCAGTGGAACTCTTGATAAGCTTCAAGGACAAACGAGATAAGTTAAAGATTGAGCATTCAAATGCAGTAAGGGAAGTCAACAAATTGAGGACGTTTGTAAATGCTGATTCTGAATATCCTCATGGAACAGAATTTCCTACATTTTCATTCTTAGAGATCAAGGAGGCAACTAATGATTTTGATCCATCTTGGATTATTGGGGAGGGAAGGTATGGAAATGTTTACAAAGGATTTCTTTGCAATATGCAAGTTGCCATAAAGCTGTTGTCCTCTTATTGCTGTCAGAGCCATCTGGAGTTCCAACACCAGGTATTTCATATAGAAAGTACCACGGGTTTACCGATTCTGTTAAGATTAATTGCCATTTGCCCTTTGCCTGTGCAGTTTACGTTGTCCATATTATTGGGTGAATTTCAGGTTGAGGTTTTGAGTAGGGTACGACATTCAAACCTTGTAACACTGATTGGAAGCTGCCAAGAATCTAGGTCACTTGTCTATGCTTACCCTAATAATGGCAGCCTTGAGGACCACCTTGCCCGCAAAGACAGGACTCCACTTCCTTGGCAAATCCGAATATCCATTGCTGCTGACATATGCTCTGCTCTTATCTTCCTTCATTCCAGCAAGCCTTCTATAATCCATGGGAATTTGAAGCCAAGTAAAATTCTCCTTGATGTAAACTTTGTTGCCAAACTTTGTGATTTGGGCATTTCTTCTTTGGTCCAGTCCAGTGGGCATTCAGCTGACAGTAACACAACAGTTGACGACCGAAATGAAAGTTTGATGCATGTGGATCCAGAATTTCTTACCACTGGGAAGCTCACACCAGAATCCGATGTGTATTCGTTTGGAATCATTTTGTTACAACTTTTAACTGGCAGACCTCTTTCTGGAATAGTAAGGGATACAAAATGTGCATTGGAGAAGGAAAATCTCAAAGTGGCATTGGACATTTCAGCTGGAGAATGGCCACTTTATCAAGTTGAACAGCTAGCATATTTGGCATTGAGGTGTTCTGAAAAGACTCGGCTGAACCGGCCAGAGCTCTTGTCAGAAATCTGGAGTGTTCTTGGACAATTACGAACTTCATGCAGTAACATGTCACCATATGCGACTTCCAAGAAGCTTCATCTTCCTCCTTCTCACTTTGTCTGCCCCATTTTTCAGGTGGTCATGAAAGATCCTTATATAGCTGCAGATGGCTTCACATATGAAGAAGACGCAATAAGAGGCTGGTTGGATGGGGGTCACAACACTTCGCCAATGACAAACCTGAAGCTTGAACACACCAACCTGGTTCCTAATTATGCGTTACTAAATGCGATTCAGGAGTGGCAGCACCTGTAA 2010 0.4124 MFPVPASLDASHGPLRNQLSQYETIVMDAAEPSFRDNYNGVEEMSNPNARAFYDMLSAAQQPLWEGCEEESQLSANGPFFFHKRKVVVVMEEHRLVNRGWILCKNSSVIKNFEHGRLELANVHATSFRSKELVGEVESSNVEDNTTMEAEALESLCANEISRRRELEELLATEKQELQNLKDQQDEIMGKLQMIQDQSSVLNGQFVESETVVRELEEKILSAVELLISFKDKRDKLKIEHSNAVREVNKLRTFVNADSEYPHGTEFPTFSFLEIKEATNDFDPSWIIGEGRYGNVYKGFLCNMQVAIKLLSSYCCQSHLEFQHQVFHIESTTGLPILLRLIAICPLPVQFTLSILLGEFQVEVLSRVRHSNLVTLIGSCQESRSLVYAYPNNGSLEDHLARKDRTPLPWQIRISIAADICSALIFLHSSKPSIIHGNLKPSKILLDVNFVAKLCDLGISSLVQSSGHSADSNTTVDDRNESLMHVDPEFLTTGKLTPESDVYSFGIILLQLLTGRPLSGIVRDTKCALEKENLKVALDISAGEWPLYQVEQLAYLALRCSEKTRLNRPELLSEIWSVLGQLRTSCSNMSPYATSKKLHLPPSHFVCPIFQVVMKDPYIAADGFTYEEDAIRGWLDGGHNTSPMTNLKLEHTNLVPNYALLNAIQEWQHL 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2212 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 600 669 IPR013083 -
Lele05g2212 669 Coils Coil 149 197 - -
Lele05g2212 669 Gene3D Phosphorylase Kinase; domain 1 356 390 - -
Lele05g2212 669 ProSitePatterns Protein kinases ATP-binding region signature. 287 308 IPR017441 GO:0005524
Lele05g2212 669 Gene3D Transferase(Phosphotransferase) domain 1 391 587 - -
Lele05g2212 669 PANTHER OS02G0152300 PROTEIN 127 665 - -
Lele05g2212 669 SUPERFAMILY Protein kinase-like (PK-like) 257 570 IPR011009 -
Lele05g2212 669 Pfam Protein tyrosine and serine/threonine kinase 361 570 IPR001245 GO:0004672|GO:0006468
Lele05g2212 669 ProSiteProfiles U-box domain profile. 599 669 IPR003613 GO:0004842|GO:0016567
Lele05g2212 669 ProSiteProfiles Protein kinase domain profile. 281 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele05g2212 669 SUPERFAMILY RING/U-box 599 667 - -
Lele05g2212 669 SMART Ubox_2 603 666 IPR003613 GO:0004842|GO:0016567
Lele05g2212 669 Pfam U-box domain 601 666 IPR003613 GO:0004842|GO:0016567
Lele05g2212 669 CDD RING-Ubox_WDSUB1_like 604 645 - -
Lele05g2212 669 Gene3D Phosphorylase Kinase; domain 1 253 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2212 Lele-ChrLele05 21963584 21970447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2212 122 668 U-box Gene Family AT3G49060 47.387 3.58e-158 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lele05g2212 PK_Tyr_Ser-Thr 4.6e-26 CL0016