Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2158 ATGGGAAGGGGTAGGGTTGAACTGAGGCGTATTGAGAACAAAATCAGCCGTCAAGTAACGTTTTCAAAGAGGCGAAGTGGACTGTTTAAGAAAGCTCAAGAAATCTCTGTGCTCTGTGATGCTCAAGTTGCTTTGATTATCTTCTCCACCAAAGGCAAGCTCTTTGAGTTCTCCTCTGATTCCAGCTTGGATGGCATTCTGGAACGATATGAGAGACAAACGCACACAGAACAACTTACTGAAGCTAGCACCGAATTGCAGGGAAACTTGTCCTTGGAGTTCTACAAACTCACCACCAAAGCTAAAATCTTGGAGAAGAACATAAGGAACTATGGAGGACATGATCTTGATATCTTGAGTTTAAGAGAGCTTCAGAACTTAGAAACACAGATCGACACAGCTATAAAGCGTATTCGAACAAGAAAGAACCAACTGATGAATGAATCCATCTCGGAGCATCAGAAGAAGGCAAGGGCATTGCAGGAGCAAAACAACATATTAGCAAAGAAGGTGAAGGAGAAAGAGAAGTCACTGACTGAAAATCCACAGAAGGAGAAGTACACTCAAGGACAAAATTTATCTGGCTTCAATGTTCCAGCTGCACCACAGCTACAACTTCCAACTTTAACTCTCGGTGCCAGTTTACAAGCAACAGGAGCAGAAGAGGAAGAAGAGATGGAAGCTGATCAGACTGCACCCAGAAGCAACACTATCATGCCACCATGGATGTTGCGTCACTTGATCAGATAG 750 0.4347 MGRGRVELRRIENKISRQVTFSKRRSGLFKKAQEISVLCDAQVALIIFSTKGKLFEFSSDSSLDGILERYERQTHTEQLTEASTELQGNLSLEFYKLTTKAKILEKNIRNYGGHDLDILSLRELQNLETQIDTAIKRIRTRKNQLMNESISEHQKKARALQEQNNILAKKVKEKEKSLTENPQKEKYTQGQNLSGFNVPAAPQLQLPTLTLGASLQATGAEEEEEMEADQTAPRSNTIMPPWMLRHLIR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2158 249 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele05g2158 249 MobiDBLite consensus disorder prediction 183 198 - -
Lele05g2158 249 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Lele05g2158 249 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele05g2158 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele05g2158 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele05g2158 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele05g2158 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele05g2158 249 MobiDBLite consensus disorder prediction 216 237 - -
Lele05g2158 249 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Lele05g2158 249 Coils Coil 124 177 - -
Lele05g2158 249 MobiDBLite consensus disorder prediction 173 198 - -
Lele05g2158 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele05g2158 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Lele05g2158 249 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lele05g2158 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele05g2158 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele05g2158 249 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2158 Lele-ChrLele05 17144721 17156456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2158 1 238 MADS-box Gene Family AT1G26310 51.210 5.43e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele05g2158 K-box 1.2e-20 No_clan