LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele05g2156	ATGGTGGCGATCATGAGATTGAGAAGCTCAGAGAATGAGTGGCGGAAAGGCCCTTGGACTCATGAAGAAGATAAGTTGCTTACTGAATATGTCAACTTGCATGGTGAGAGAAATTGGAGTTCTGTATCAAGATTTTCAGGGTTGAATAGGAGTGGCAAAAGTAGCAGGTTGCGATGGGTGAACTATTTGAAACCTGGACTCAAGAAAGGCCCACTTACACCTCAAGAGGCGGGCATACTTATGGAACTGCATGCTGTGCTGGGTAACAAGTGGTCTACAATAGCTAAATACTTGCCTGGTAGAACAGACAATGAGATCAAGAACTATTGGAGAACCAACTTCAAGAAGAAAGGCCACAAGCTCTCTCACAATAAGAACCTTGAAAATCGAAGAGCAAATATGCTGCTAAGTAAACATCAAACAGCAGTCAGAGAGCAACAAACTCAAGAACATGATATGAAAGACATATCCTCTCATGTTTCTGATACAAAAAGTGATCAACCAAGCATGATCGAGACACCAGAAAACAAAAACCAAGAGATCATGAATTTAATTCAGAACCCAACTTTCGAAGATCAGTTTTACATGCCTTCGATGTACCAAGAGACGTATTTTCCATCTTCATGGACAGAAACTGATAAAGATGATAGCTTGTCGGTTAGTTTATGGAAGCTGCTTGATGCATGA	687	0.409	MVAIMRLRSSENEWRKGPWTHEEDKLLTEYVNLHGERNWSSVSRFSGLNRSGKSSRLRWVNYLKPGLKKGPLTPQEAGILMELHAVLGNKWSTIAKYLPGRTDNEIKNYWRTNFKKKGHKLSHNKNLENRRANMLLSKHQTAVREQQTQEHDMKDISSHVSDTKSDQPSMIETPENKNQEIMNLIQNPTFEDQFYMPSMYQETYFPSSWTETDKDDSLSVSLWKLLDA	228

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele05g2156	228	CDD	SANT	73	114	IPR001005	-
	Lele05g2156	228	Pfam	Myb-like DNA-binding domain	69	112	IPR001005	-
	Lele05g2156	228	Pfam	Myb-like DNA-binding domain	16	63	IPR001005	-
	Lele05g2156	228	SUPERFAMILY	Homeodomain-like	14	110	IPR009057	-
	Lele05g2156	228	MobiDBLite	consensus disorder prediction	144	172	-	-
	Lele05g2156	228	ProSiteProfiles	Myb-like domain profile.	11	63	IPR001005	-
	Lele05g2156	228	SMART	sant	68	116	IPR001005	-
	Lele05g2156	228	SMART	sant	15	65	IPR001005	-
	Lele05g2156	228	CDD	SANT	18	63	IPR001005	-
	Lele05g2156	228	ProSiteProfiles	Myb-like domain profile.	64	114	IPR001005	-
	Lele05g2156	228	MobiDBLite	consensus disorder prediction	144	161	-	-
	Lele05g2156	228	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	10	186	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Lele05g2156	228	FunFam	Myb transcription factor	16	68	-	-
	Lele05g2156	228	Gene3D	-	16	68	-	-
	Lele05g2156	228	Gene3D	-	71	180	-	-
	Lele05g2156	228	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	64	118	IPR017930	-
	Lele05g2156	228	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	15	63	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele05g2156	Lele-ChrLele05	17047672	17049514	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele05g2156	15	221	MYB Transcription Factor Family	AT3G30210	44.843	1.10e-55	177

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele05g2156		Myb_DNA-binding	4.2e-14	CL0123