Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2093 ATGGAGGAGTGCATTCTTCAGAATCCTTCAGATGTGATTGGTGAAGCTAGAGATCAAATTGAATACCCCCTCACAGTACTTAAAAATGAAGTAGAAGATGAAGAAGATTCTGTTAAAGAAGTTGAACAAAAGCAGCTAGAAGAAACAACTCTTAATGGGAACGATAACAAAGCAGGATTTGTTAAATCAAATGATAAGAAGAGGTATCTGAATGTTGCACCTGCTGAATTAACTCCATTGACCTGCTATCAGTCACAAAAGAAGTGCAAGCAAGTGGGATCTTCTGGTCTGAAATTAGAATCTGGACCTTCAGATTCGGAGCTCAATAATGACTCTGTCACAGGAAGTTCTGGGAGTTCCAAAGAAGGTATTGGAAGTTCTGGAAAACGAAGGCGCAGCAGCTGGGAACCACAGTCTCTGGATGATGGTGTAAAAGACGATCAGACTCGCAAGAGGAGGAAAACCAGGTGGTCCGATGAGGACACTCAACTAAAAATGCTGGGACCACTTCAGCTACCTGATTTCAAGAAAGATTTTCTTGTTGGATATGGGAATGATCCTGAAATTCAAGGGTTGAAAGATGAGCTTTCTGAGATTAATAGAAGGTTGCATGGACCTCTTCATGATAATAGGCTTGAGGAGGAAAGATCTCCTTCACCAGAACCAATATATGATGATGACCTTGGCATCAGAATAAATACAAGAGAAGTAAGACTTCAACAGAAACTTGTCCAGAAACGTCAAAATATCATATCAAAATTGATCAAATCAAACCGATGTTTTAGGCCTCCTGATTACAAGCCTTCAAAACTCTTCAAAAGACTTTACATCCCAATGAAAGAATATCCAGAGTACAATTTTGTTGGCCTTATAATTGGGCCTCGTGGAAACACGCTGAAGAGAATGGAAAATGAAACTGGGGCCAAGATTCATATAAGAGGAAAAGGATGCTCAAAAACACCCAACAAATCTGCCTCTTCTAAAGAGGACTTACATGTGTATATAGAAGCAGACAACAGAAATTCTCTGGATGCGGCAGTTGCCATGGTTGAAAAACTGCTAATCCCAGTCGAAGGAACAAATGATCTCAAGGAGGCTCAATTAAAGGAGCTGGCCATGCTGAATGGAACAGTTAGGGATGAAAATGTGTGCTATGTTTGTGGTGATGAGGGGCATCTGTCATATTCCTGCCCTGACCTTCAATCAACTTTCGAAGTGAACTCATTGTATACATGTTTTAGTGCCAGTCATTTGGATATGCTGTCTCCGCAGAATGAATCTGTGCAGGGTTTCGGGTTTGGTTTTAGTTTCGGTTCAACACAGAGTAGCCAACGGATGCCTGAAAATAAATCATTGATGAATAATCTTTATGTTGGCAATCTTCCTCAAGCGTTTGATGATAATAGATTGTCTGAGCTGTTTTCTCCATTTGGTAAGATCCTCGAAGTAAAAGCAATCAAGGATCGAACAACTAGAATTTGTAGAGGTTATGGATTTGTCAAGTTTGAAAATCCCACAGATGCACAAGTAGCTGTGACTCATATGAACGGTTTTAAAATGGATGGTAGGGTTTTGAAGGTAAGGATAGCTAGGGTTTTATCAAATACTGAATCTTCAAGCTTGAACCACCTTCCACAGAGCTCTGGTCCTGCAGGTATATCCCAAACTGGGCCATTACATTTTAAGCTGCCAGCACATCCAACTTTGCTTCACAACAGCAGTGGCATGAACCTGTTTTCACCCACTATGAACTCACTGCATTGTGATCTTTGGAAGGATAGAAGCTTTTCTCCTCCAAGCTACTGCTCAAGCACTTCTGATTTTAGTAATTCTGGCAAAATGCATTTTTCATGCAACTCTTCTGATCAAAGTGTTTTCTTATCCGGTAGTTCAATTTCAGAGTGTCCTGGCTCCCAATATCAGTCATATTTTATGACGCCGCCACTCCATAAAGCTGCACTGCTCTATCCTGATCACAGATTAGAAGATACGGATTCTTTCCCTTCTTCATTGCAGAGAAGGTATTACAGAGCACTTAATTGA 2043 0.4058 MEECILQNPSDVIGEARDQIEYPLTVLKNEVEDEEDSVKEVEQKQLEETTLNGNDNKAGFVKSNDKKRYLNVAPAELTPLTCYQSQKKCKQVGSSGLKLESGPSDSELNNDSVTGSSGSSKEGIGSSGKRRRSSWEPQSLDDGVKDDQTRKRRKTRWSDEDTQLKMLGPLQLPDFKKDFLVGYGNDPEIQGLKDELSEINRRLHGPLHDNRLEEERSPSPEPIYDDDLGIRINTREVRLQQKLVQKRQNIISKLIKSNRCFRPPDYKPSKLFKRLYIPMKEYPEYNFVGLIIGPRGNTLKRMENETGAKIHIRGKGCSKTPNKSASSKEDLHVYIEADNRNSLDAAVAMVEKLLIPVEGTNDLKEAQLKELAMLNGTVRDENVCYVCGDEGHLSYSCPDLQSTFEVNSLYTCFSASHLDMLSPQNESVQGFGFGFSFGSTQSSQRMPENKSLMNNLYVGNLPQAFDDNRLSELFSPFGKILEVKAIKDRTTRICRGYGFVKFENPTDAQVAVTHMNGFKMDGRVLKVRIARVLSNTESSSLNHLPQSSGPAGISQTGPLHFKLPAHPTLLHNSSGMNLFSPTMNSLHCDLWKDRSFSPPSYCSSTSDFSNSGKMHFSCNSSDQSVFLSGSSISECPGSQYQSYFMTPPLHKAALLYPDHRLEDTDSFPSSLQRRYYRALN 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2093 680 CDD SF1_like-KH 273 379 - -
Lele05g2093 680 MobiDBLite consensus disorder prediction 93 124 - -
Lele05g2093 680 MobiDBLite consensus disorder prediction 125 161 - -
Lele05g2093 680 ProSiteProfiles Zinc finger CCHC-type profile. 384 399 IPR001878 GO:0003676|GO:0008270
Lele05g2093 680 MobiDBLite consensus disorder prediction 31 46 - -
Lele05g2093 680 MobiDBLite consensus disorder prediction 31 66 - -
Lele05g2093 680 SMART c2hcfinal6 383 399 IPR001878 GO:0003676|GO:0008270
Lele05g2093 680 PANTHER RNA-BINDING PROTEIN RELATED 133 551 IPR045071 -
Lele05g2093 680 Gene3D - 424 540 IPR012677 -
Lele05g2093 680 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 454 532 IPR000504 GO:0003723
Lele05g2093 680 SMART rrm1_1 455 528 IPR000504 GO:0003723
Lele05g2093 680 Pfam Splicing factor 1 helix-hairpin domain 153 267 IPR032570 -
Lele05g2093 680 SUPERFAMILY Retrovirus zinc finger-like domains 379 402 IPR036875 GO:0003676|GO:0008270
Lele05g2093 680 Pfam KH domain 286 351 IPR004088 GO:0003723
Lele05g2093 680 MobiDBLite consensus disorder prediction 207 226 - -
Lele05g2093 680 Gene3D K Homology domain, type 1 264 385 IPR036612 GO:0003723
Lele05g2093 680 Coils Coil 24 44 - -
Lele05g2093 680 MobiDBLite consensus disorder prediction 93 162 - -
Lele05g2093 680 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 456 526 IPR000504 GO:0003723
Lele05g2093 680 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 271 382 IPR036612 GO:0003723
Lele05g2093 680 Gene3D - 187 263 - -
Lele05g2093 680 ProSiteProfiles Type-1 KH domain profile. 286 350 - -
Lele05g2093 680 SMART kh_6 271 355 IPR004087 GO:0003676
Lele05g2093 680 SUPERFAMILY RNA-binding domain, RBD 439 534 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2093 Lele-ChrLele05 15550743 15552785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2093 447 527 Eukaryotic Initiation Factors Gene Family AT2G36660 43.210 3.97e-11 64.3