Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2088 ATGGCTCCGCCGACGGTGGATCATAAAGGCGAGTTCACGGCCGGTGAGTCTCAGAGATCTATTCCGACGCCTTTTTTAACGAAAACTTATCAACTTGTTGACGATCATACCATAGACGAAGTCATATCGTGGAACGAAGATGGATCCAGTTTCATCGTTTGGAATCCTACGGTTTTCGCCAGAGATTTGCTTCCAAAATATTTTAAGCACAACAATTTCTCTAGCTTCGTCCGCCAACTTAACACCTATGGATTCAGAAAAGTAGTGTCGGATCGGTGGGAATTCACGAACGAGTGTTTTTGCAGAGGCAAGAAACAACTTCTGTGCGAAATTCAGCGTCGGAAAATCTCATCGCCTTCGCCACCACCGGCAGGTGCAACTGTGGTAGCGTCAGTTCCGGCGCCGGCGCCATTGATGGCAATACCAACGGCGAAGCCTATAATATCGCCTTCAAACTCAGGGGAAGAACAAGTCGTTACGTCGAATTCATCGCCCACCGGAGCTCCGGCGGAACTCTTAAGCGAGAACGAGAGGCTGAGAAAAGAAAACGTTCAGCTGAGCAAGCAATTAGCAGAGATGAGATCTCTGTGTAACCACATATTCAATCTAATGTCAAAGTACGCAAATAACCAAAATAGCAGTTTGCAAGGTAGAGCGAGTGACTTCGCCGTGAAACCGCTCGATTGGATGCCGGTTGCGAATAATTCCGGTAACGTGGACTCGGTGGCGATGGGGGAAGACGAAATGAATCCGAAGCTGTTTGGGGTGGCGATCGGGGCGAAGCGATCACGAGAAGTCGGAGGCGGTGACGAAGGCGATCCGGTGCTGAGCTTGTACAGAGCGGGGCCCACAGAGATGAGATCAGAGCCGTTGGGTTGCCAGAGGCGGCGAGATAATCAGGAAGCGCCGTGGCTGAATCAGTGCCATAACGCGAATCAGAGAGTTTGTAATTAA 954 0.501 MAPPTVDHKGEFTAGESQRSIPTPFLTKTYQLVDDHTIDEVISWNEDGSSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVSDRWEFTNECFCRGKKQLLCEIQRRKISSPSPPPAGATVVASVPAPAPLMAIPTAKPIISPSNSGEEQVVTSNSSPTGAPAELLSENERLRKENVQLSKQLAEMRSLCNHIFNLMSKYANNQNSSLQGRASDFAVKPLDWMPVANNSGNVDSVAMGEDEMNPKLFGVAIGAKRSREVGGGDEGDPVLSLYRAGPTEMRSEPLGCQRRRDNQEAPWLNQCHNANQRVCN 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2088 317 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele05g2088 317 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele05g2088 317 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele05g2088 317 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele05g2088 317 FunFam Heat stress transcription factor B-4 17 115 - -
Lele05g2088 317 Gene3D - 17 115 IPR036388 -
Lele05g2088 317 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 226 IPR027725 -
Lele05g2088 317 Coils Coil 176 196 - -
Lele05g2088 317 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Lele05g2088 317 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele05g2088 317 MobiDBLite consensus disorder prediction 150 170 - -
Lele05g2088 317 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2088 Lele-ChrLele05 15482298 15483348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2088 1 317 HSF AT5G62020 46.407 6.17e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele05g2088 HSF_DNA-bind 1.1e-32 CL0123