Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2070 ATGGATGTAGATGGGGGCAATAAGCGCGTCTTCCAGCGTTTCGGTGGGCCTCCTGCTGATAACAAGCACGAGAAAGTGTGTTTTCATTGGCAGGCAGGCAGGTGCAACAGACATCCGTGCCCGTTTCGACACAGCGAATTACCTCCAAACGCCAATGGAATGTCTTCGAAAAGGTCCCATGGGTCTTACGATGATTCAGGGTTCTCGGGTCCACGAAGGAATCCGAATTTTAATGGATCGTCAACGTGGGGCGGGGTTCATGGTGGTAATAAAATAATTAGGAAGACTGAAAAGCTTTGTACTTATTGGATTAAGGGGAATTGTAGTTATGGAGAAAGGTGTAAGTACCTTCACTCTTGGAGTGTAGGGGATGGTTTTTCCTTACTAACGCAACTTGAAGCCCATCAGAAGGTTGTGACCGGAATATCTCTGCCATCTGGTTCAGATAAGCTTTACACTGGAAGTAAAGATGAGACAGTTAAGCTCTGGGATTGCCAGTCTGGTCAGGGTAGTAGTTATGAGTGTTTGGCTGTGATTAATCTTGGCTGTGAAGTGGGTTGTATGATCAGTGAAGGTCCTTGGCTTTTTGTTGGTGTGCCTAATTTTGTTAAGGCCTGGAACACTCAAATATCAAGTGAACTGAGTCTGAGTGGCCCTGCTGGACAAGTTTACACTTTGGCTGTGGGCAACAATATGCTTTTTGCTGGTACACAGGAGGGGTCTATATTGGTGTGGAAGTTTAATGCGGCTACTAACAACTTTGAGCCTGTTACATCACTTATGGGTCATTCCGGTTCTGTTGTTTCATTTGTTGTTGGAGCAAATAGGCTATACTCAGGTTCAATGGACAAGACCATAAGAGTCTGGAACCTTGAGACATTGCAGTGTTTACAGACTTTAACAGGGCATACATCAGTTGTGATGTCTGTTCTTTGCTGGGACCAGTTTCTCTTATCTGGTTCATTAGACAAGACAGTAAAGGTATGGGTAGCTACAGAAAGTGGAAACTTGGAAGTGACGTATACTCACAATGAGGAAGATGGTGTGCTTAAACTGTGTGGCATGCACGATGCTCAAGGCAAGCCCATTTTGCTGTGCTCTTGCAACAATAATACTGTTCACCTCTATGATCTGCCATCCTTCACAGAGAGAGGCAAGATTTTCACAAAGCAAGAGGTTAGAGCTATCGAGGTTGGTCCTGGTGGCTTATTCTTCACCGGTGATGGCACAGGTCAAGTGAAAGTCTGGAATTGGTTGCCGGAGCCAGCTTCTTCCCGTCCAATAAATGGCTCTTCATAA 1299 0.4527 MDVDGGNKRVFQRFGGPPADNKHEKVCFHWQAGRCNRHPCPFRHSELPPNANGMSSKRSHGSYDDSGFSGPRRNPNFNGSSTWGGVHGGNKIIRKTEKLCTYWIKGNCSYGERCKYLHSWSVGDGFSLLTQLEAHQKVVTGISLPSGSDKLYTGSKDETVKLWDCQSGQGSSYECLAVINLGCEVGCMISEGPWLFVGVPNFVKAWNTQISSELSLSGPAGQVYTLAVGNNMLFAGTQEGSILVWKFNAATNNFEPVTSLMGHSGSVVSFVVGANRLYSGSMDKTIRVWNLETLQCLQTLTGHTSVVMSVLCWDQFLLSGSLDKTVKVWVATESGNLEVTYTHNEEDGVLKLCGMHDAQGKPILLCSCNNNTVHLYDLPSFTERGKIFTKQEVRAIEVGPGGLFFTGDGTGQVKVWNWLPEPASSRPINGSS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2070 432 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 293 - -
Lele05g2070 432 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Lele05g2070 432 SUPERFAMILY CCCH zinc finger 95 119 IPR036855 GO:0046872
Lele05g2070 432 SMART c3hfinal6 96 120 IPR000571 GO:0046872
Lele05g2070 432 SMART c3hfinal6 23 46 IPR000571 GO:0046872
Lele05g2070 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 299 IPR001680 GO:0005515
Lele05g2070 432 SMART WD40_4 125 164 IPR001680 GO:0005515
Lele05g2070 432 SMART WD40_4 334 377 IPR001680 GO:0005515
Lele05g2070 432 SMART WD40_4 253 290 IPR001680 GO:0005515
Lele05g2070 432 SMART WD40_4 380 417 IPR001680 GO:0005515
Lele05g2070 432 SMART WD40_4 209 246 IPR001680 GO:0005515
Lele05g2070 432 SMART WD40_4 293 330 IPR001680 GO:0005515
Lele05g2070 432 PANTHER - 68 424 IPR044715 -
Lele05g2070 432 Pfam WD domain, G-beta repeat 295 329 IPR001680 GO:0005515
Lele05g2070 432 Pfam WD domain, G-beta repeat 128 164 IPR001680 GO:0005515
Lele05g2070 432 Pfam WD domain, G-beta repeat 255 290 IPR001680 GO:0005515
Lele05g2070 432 Gene3D - 19 118 - -
Lele05g2070 432 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Lele05g2070 432 PRINTS G protein beta WD-40 repeat signature 317 331 IPR020472 -
Lele05g2070 432 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Lele05g2070 432 Pfam CCCH-type zinc finger 98 118 IPR041367 -
Lele05g2070 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 173 IPR001680 GO:0005515
Lele05g2070 432 ProSitePatterns Trp-Asp (WD) repeats signature. 277 291 IPR019775 -
Lele05g2070 432 MobiDBLite consensus disorder prediction 46 82 - -
Lele05g2070 432 Gene3D - 214 429 IPR015943 GO:0005515
Lele05g2070 432 MobiDBLite consensus disorder prediction 49 82 - -
Lele05g2070 432 ProSiteProfiles Zinc finger C3H1-type profile. 94 121 IPR000571 GO:0046872
Lele05g2070 432 SUPERFAMILY WD40 repeat-like 113 418 IPR036322 GO:0005515
Lele05g2070 432 Gene3D - 119 198 IPR015943 GO:0005515
Lele05g2070 432 FunFam Zinc finger CCCH domain-containing protein 48 217 425 - -
Lele05g2070 432 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 164 - -
Lele05g2070 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 329 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2070 Lele-ChrLele05 15158986 15163359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2070 220 417 Miscellaneous Gene Families AT5G08390 27.014 1.46e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele05g2070 WD40 0.00069 CL0186