Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2053 ATGGGAAGAGGAAGAGTGGTTCTGGAGAGAATAGAGAACAAGATCAACAGGCAAGTGACGTTCTCGAAGAGAAGGAATGGATTGCTGAAGAAAGCGTACGAGCTTTCTGTGTTGTGCGATGCTGAAGTCGCTCTTATTATCTTTTCCAGCCGTGGCAAGCTTTTCCAGTACAGCAGCTCTGACCTAAACAGAACCATAGAGAGGTATCGTGAATGTTGTTACAACTCACAAACTCACGACCTTGTTGAACATGAATCTCAGAACTTGTACCAGGAGCTTTTGAGATTAAAAGTCAAACATGAATCTCTTGAGAGGACACAAAGGCATCTTCTTGGAGAAGATCTTGAGCCACTAAACATGAAGGAATTGCATAATCTGGAGAATCAACTCGATAAAACCCTAACACAAGCGCGACAGCGCAAGACCCAGAAGATGATGGAACGGGCAGATGAGTTACGCAAAAAGGGACACGAACTAGAGGAGGTCAACAAGCAACTCAACTACAAGCTTCAAGAAATATATGAACGTAGCCAAAACGTAGAAGATGTTGGAGTCCAATCAGTAACAAATCACAGCTCCTTACAAATGTGGCATGGGCAGAAGGAAGATAGTTCAAAAGGGAAAGCGATCGAAACGATGACACAGCTGGGTGGGCAGATCAGTCATAACAATAGCATCAACCACAACAACGGATGGCTTATTTGA 705 0.4369 MGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLFQYSSSDLNRTIERYRECCYNSQTHDLVEHESQNLYQELLRLKVKHESLERTQRHLLGEDLEPLNMKELHNLENQLDKTLTQARQRKTQKMMERADELRKKGHELEEVNKQLNYKLQEIYERSQNVEDVGVQSVTNHSSLQMWHGQKEDSSKGKAIETMTQLGGQISHNNSINHNNGWLI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2053 234 Coils Coil 120 143 - -
Lele05g2053 234 Coils Coil 86 106 - -
Lele05g2053 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Lele05g2053 234 FunFam MADS-box transcription factor 1 13 84 - -
Lele05g2053 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele05g2053 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele05g2053 234 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele05g2053 234 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele05g2053 234 Coils Coil 149 169 - -
Lele05g2053 234 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lele05g2053 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele05g2053 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele05g2053 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele05g2053 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele05g2053 234 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Lele05g2053 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele05g2053 234 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2053 Lele-ChrLele05 14820933 14827633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2053 1 171 MADS-box Gene Family AT2G45650 61.988 1.71e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele05g2053 K-box 2.3e-24 No_clan