Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2034 ATGCCTTCTCTTCCTGTCTCTGATATTGCTCTTTCTGAGACTCCCAAAGATAAGAAGGAGAAGAAGAAGAAGATGAAGAACGAGGCTCTAATCGAAGACAGGGTTTCGTCGAAGAAGAAGAAGGAGAGCAAGAAGCGTAAAGCTTTGGATGCTGAGATAATGGCGAGCGAGGATGAGGTAAAGAGTGAGACGAGTTCCGAGTTGGTTGAGCCTGATAGTGTGAAAGAAAAGAAGAAGAAGAAAAAGGCTAAGTTAGATGAACCAGAAGATAAAGAGGAAGAGGTTGAGAAGGAGGATCCTAATGCAATCTCGAACTTTAGGATATCGGCGCCGTTGAGGGCCAAGTTGAAAGAGAAGGGAATTGGATCACTGTTTCCTATTCAGGCCATGACTTTCGATACCATCCTCGACGGCTCTGATTTGGTTGGTCGGGCTCGCACTGGGCAGGGTAAAACTCTTGCCTTTGTGTTACCGATATTAGAGTCTTTAACAAATGGTCCTGCAAAAGCGGCGAGAAAGTCTGGATATGGAAGGGGTCCATGTGTTATTGTGCTCTTACCTACTAGAGAATTGGCCAAACAGGTGTTTGCTGATTTTGAAGTTTATGGTGGGGCATTGGGATTGACCTGTTGTTGTTTATATGGTGGAGCTCCATATCAAGCACAAGAATTCAAACTCAAGAAGGGTGTTGATGTTGTTGTTGGAACTCCAGGGCGCATAAAAGACCATATAGAGAGGAATAATCTTGACCTGAGCCAACTAAAGTTCCGTGTCCTCGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTCGAAGATGTGGAACTCATTCTGGGGAAGGTAGAGGATGTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGATTGGGTTAAGAGTATTTCTAAGAAATTTCTGAATTCTGATAAAAAAACTGCTGACCTGGTGGGCAATGAGAAAATGAAAGCTAGTACTAATGTTAGGCATATTGTTCTCCCATGTTCTAGTGCTGCCAGGGCCCAACTTATTCCAGATGTTATACGTTGCTATTGCAATGGAGGCCGGACAATTATATTTACTGAGACCAAGGAGTCTGCTTCTGAGCTTGCAGGTTTGTTGCCTGGTGCACGAGCTCTGCATGGTGATATACAGCAGTCACAACGTGAGGTTACCTTGGCTGGTTTCAGGGCTGGGAAGTTTACCACCTTAGTGGCCACTAATGTAGCAGCCCGTGGTTTGGACATTAATGATGTTCAGTTAATTATCCAGTGTGAACCGCCACGTGATGTAGAAGACTATATCCATCGATCTGGGCGCACGGGAAGAGCAGGTAATACTGGAGTTGCTGTTATGCTTTATGATCCAAGAAGGTCAAATATATCAAAAATAGAAAGAGAATCTGGTGTGAAATTTGAACACATATCTGCTCCTCAGCCTGCTGATATTGCAAAAGCTGTAGGTGGGGATGCTGCTAAAATGATAACCCAAGTGTCTGATAGTGTCATTCCTGCATTCAAATCTGCTGCGGAGGATCTTTTAAATAATTCAGGCTTAACAGCTGCTGAATTACTTGCAAAGGCTCTTGCCAAGACTATTGGTTATACGCAGATAAAGAAAAGATCACTACTCAATTCCATGGAGAACCATGTCACATTACTTCTTGAGATTGGAAGACCCATCTACACCCCTTCATTTGCATTTGGAATCTTGAGGAGATTCTTGCCTCAGGATAAGGTTGACTCAGTGAATGGTCTTACCCTCACTGCAGATGGAAATGGTGCTGTTTTTGATGTTGCAGCTGAGGACTTAGATATCTTTCTTACTGGTCAGGAAAATGCTGCTAATGTAAGTTTAGAAGTAGTGGAAGCGTTGCCAAGTTTGCAAGAAAGAGAACAATCAAGAGGTAGATTTGGCAGTGGTTGGGGTGGTGGCGGTAACAGGTTTTCTGGTGGAAGGGGCGGCGGTGGCAGATTTTCTAATGATAGAAATGGTAGGTTTTCCAATAATAGAGGTGGGAGAGGTCGTGGCAACAGTGGGGCAAAGAGGCGGTGA 2058 0.4402 MPSLPVSDIALSETPKDKKEKKKKMKNEALIEDRVSSKKKKESKKRKALDAEIMASEDEVKSETSSELVEPDSVKEKKKKKKAKLDEPEDKEEEVEKEDPNAISNFRISAPLRAKLKEKGIGSLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKAARKSGYGRGPCVIVLLPTRELAKQVFADFEVYGGALGLTCCCLYGGAPYQAQEFKLKKGVDVVVGTPGRIKDHIERNNLDLSQLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPDWVKSISKKFLNSDKKTADLVGNEKMKASTNVRHIVLPCSSAARAQLIPDVIRCYCNGGRTIIFTETKESASELAGLLPGARALHGDIQQSQREVTLAGFRAGKFTTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVKFEHISAPQPADIAKAVGGDAAKMITQVSDSVIPAFKSAAEDLLNNSGLTAAELLAKALAKTIGYTQIKKRSLLNSMENHVTLLLEIGRPIYTPSFAFGILRRFLPQDKVDSVNGLTLTADGNGAVFDVAAEDLDIFLTGQENAANVSLEVVEALPSLQEREQSRGRFGSGWGGGGNRFSGGRGGGGRFSNDRNGRFSNNRGGRGRGNSGAKRR 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2034 685 CDD GUCT_RH7_like 542 627 - -
Lele05g2034 685 Pfam GUCT (NUC152) domain 535 630 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lele05g2034 685 MobiDBLite consensus disorder prediction 12 90 - -
Lele05g2034 685 Pfam DEAD/DEAH box helicase 125 302 IPR011545 GO:0003676|GO:0005524
Lele05g2034 685 Pfam Helicase conserved C-terminal domain 354 446 IPR001650 -
Lele05g2034 685 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 485 IPR001650 -
Lele05g2034 685 SUPERFAMILY RNA-binding domain, RBD 539 622 IPR035979 GO:0003676
Lele05g2034 685 SMART ultradead3 120 332 IPR014001 -
Lele05g2034 685 MobiDBLite consensus disorder prediction 631 685 - -
Lele05g2034 685 FunFam DEAD-box ATP-dependent RNA helicase 7 552 624 - -
Lele05g2034 685 Coils Coil 39 59 - -
Lele05g2034 685 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 38 507 - -
Lele05g2034 685 SMART helicmild6 369 446 IPR001650 -
Lele05g2034 685 Gene3D - 554 624 - -
Lele05g2034 685 CDD DEADc 112 309 - -
Lele05g2034 685 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 314 IPR014001 -
Lele05g2034 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 458 IPR027417 -
Lele05g2034 685 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 258 266 IPR000629 -
Lele05g2034 685 Gene3D - 48 314 IPR027417 -
Lele05g2034 685 MobiDBLite consensus disorder prediction 1 100 - -
Lele05g2034 685 CDD SF2_C_DEAD 329 455 - -
Lele05g2034 685 Gene3D - 325 553 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2034 Lele-ChrLele05 14559994 14564115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2034 138 485 Eukaryotic Initiation Factors Gene Family AT1G72730 31.161 6.63e-42 155