Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2031 ATGTATTCTGATAGTAGTTCTGCATGGATATTTTCACAGGAAAAGATGTTATTGGGCTTGCATGAACTGGCTCTGGGAAGACTGGTGCTTGTGCTCTTCCCGTACTTGCATGCCCTTCTAGAAGCACCACAACCAAAAGACTTTTTTGCTTGCGCTGAAATTGGTGTCAAGTGTGCTGTGGTTGGGACTCCTGGTCGTGTTTTAGATCACCTAAAAAACACTAAAGGTGCTGGGGTTGTTATTTTCATAGATGTGATGGAGTCAGTCCCATTTTCATGTTTGTCTATTGCATTGCTAATTTGCTGTATTGTCATGTTGAAAGACAGATTAGTTCTAGTTGGAAATCCGTGTCCAAAAACTCCTAAGGGTTTGTTTAAGGAATCCTGTGAAGTTCAGATTGAAGCAGCGTCTAAATATTCTACCGTTGACACTTTGAAGCAGCAGTATCGCTTTTTGCCTGCTAAGCACAAGGCCTTCGTGGTTCTGATTTGCAGCTTATCATTTTTGTTGATATTGTATAGTGCTACTGTTAAAAGGATCTTTAGATTTCCAAAATTATTTGTCAAGGCAAAACTTCTTTCTAGGGAGTTTGTAGAGAAAGGTGATGTGGTGGGGAAAGGATGGGGAAAAGAATGTGACCATACTGAGGTCATTCAAATTTCTGATTCCAGAACCGATTGTTGCCTGGTCTATATTCTGACTGAAATGGCTGGAAGTACGTCCAAGTCAAAGAGACTTGGAGCCTTGAATAAGTTCAAGTCTGGAGATTGCAATATTCTTATTTGTACTGATGTGGCAAGTAGGGGTCTGGACATTCCTACAGTAGATATGGTTATCAACTATGATATCCCTACAAACTCAAAGGATTATATACATCGTGTGGGAAGAACCGCACGGGGAGGGCGATCTGGCGTTGCCATTTCCCTTGTGAATCAATATGAGCTGGAGTGGTACATTCAGATAGAGAAGCTTATAGGCAAGAAATTACCAGAGTATCATGTGCAGGAAGAGGAGATTCTGCTTTTGGAAGAGCGTGTCAGTGAGGCCAAAAGATTATCAGCAATGAAATTGAAGGATAATGGAGGGAAGAGGAGAAGGAAGGGTGAAGGAGATGAAGATGAAGATATGGAAAAATACTTAAGGTTAGAGGGCTTGCAGTATCTCATTTGGCCTGCTAAGCACAAGGATTGCTACCTGGTCTATATTCTGACTGAAATGGCTGGAAGTACGTCCATGGTGTTTACCCGCACATGTGATTCAACTCAGCTCCTGACTTTAACTCTTAGAACTTTGGGCTTCAAAGGCATCCCGATTAACGGTCATATGAGCCAGAGACTTGGAGCCTTGAATAAGTTCAAGTCTGGAGATTGCAATATCCTTATTTGTACTGATGTGGCAAGTAGAGGTCTGGACATTCCAACCGTAGATAGGGTTATCAACTATGATATCCCTACAAACTCAAAGAAGAGGTTACCAGAGTATCCTGTGCAGAAAGAGGAGGTTCTTCTTCTGGAAGAGCGTGTCAGTGAGGCCAAAAGATTATCAGCAATGAAAAGGGAGGAGAATGGAGGGAAGAGGAGAAGGAAGGGTGAAGGAGATAATAAAGAGGAAGATATTGAGAAATTCTTAGGTCTCAAGGATGGAAAATCATCCAGGAACAACGTGCTGCTCGCTGTTTCTGTGTAG 1686 0.4211 MYSDSSSAWIFSQEKMLLGLHELALGRLVLVLFPYLHALLEAPQPKDFFACAEIGVKCAVVGTPGRVLDHLKNTKGAGVVIFIDVMESVPFSCLSIALLICCIVMLKDRLVLVGNPCPKTPKGLFKESCEVQIEAASKYSTVDTLKQQYRFLPAKHKAFVVLICSLSFLLILYSATVKRIFRFPKLFVKAKLLSREFVEKGDVVGKGWGKECDHTEVIQISDSRTDCCLVYILTEMAGSTSKSKRLGALNKFKSGDCNILICTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARGGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYHVQEEEILLLEERVSEAKRLSAMKLKDNGGKRRRKGEGDEDEDMEKYLRLEGLQYLIWPAKHKDCYLVYILTEMAGSTSMVFTRTCDSTQLLTLTLRTLGFKGIPINGHMSQRLGALNKFKSGDCNILICTDVASRGLDIPTVDRVINYDIPTNSKKRLPEYPVQKEEVLLLEERVSEAKRLSAMKREENGGKRRRKGEGDNKEEDIEKFLGLKDGKSSRNNVLLAVSV 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2031 561 CDD SF2_C_DEAD 386 488 - -
Lele05g2031 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 344 IPR027417 -
Lele05g2031 561 Coils Coil 332 352 - -
Lele05g2031 561 MobiDBLite consensus disorder prediction 514 537 - -
Lele05g2031 561 Gene3D - 190 379 IPR027417 -
Lele05g2031 561 PANTHER RNA HELICASE 386 488 - -
Lele05g2031 561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 144 340 IPR001650 -
Lele05g2031 561 SMART helicmild6 223 301 IPR001650 -
Lele05g2031 561 SMART helicmild6 422 512 IPR001650 -
Lele05g2031 561 Gene3D - 385 513 IPR027417 -
Lele05g2031 561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 556 IPR001650 -
Lele05g2031 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 487 IPR027417 -
Lele05g2031 561 Pfam Helicase conserved C-terminal domain 234 301 IPR001650 -
Lele05g2031 561 Pfam Helicase conserved C-terminal domain 398 487 IPR001650 -
Lele05g2031 561 CDD SF2_C_DEAD 238 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2031 Lele-ChrLele05 14530255 14548886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2031 380 486 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 1.57e-10 61.2