Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2020 ATGGAAGAAAAAGATAGTTTTTTCTCAGGGCTAACCGTGAAGGCTAACGATGCTCCGGAAAGCCACCATATAACTCCGAGAAGTGGAAACTATGGGCTGTTTGGCGGGCCCACAGGAGCATCGCCATCCCCAGCCCCGGCCCCGGCCCCGGCCCCGGCCCCTACACCCGCTCCGACTACGGCTCCAGCTTTAGCTAGAGCTCCAGTGCCAGATTCAGTTTCGGCGCCGGAGGCGGTCAGTGCGGCGGCGGCGGCAGGGAGTACGGATGTAGTAAAGAAGAAAAGGGGAAGGCCTAGGAAGTACGGGCCTGATGGTAAATTAGCGTTGGCGTTGTCGCCGATGCCGATTTCATCTTCAATTCCGTTGACTGGAGACTACTCAATGTGGAAACGGGGTAGAGGACGGCCGGTTCAATCGGTCAAGAAGTCGTCGTTTAAGTGCGATTTTGAAAGCCCTGGACCAGGTGATGGGATTGCATACTCAGTTGGTGCCAATTTCACACCCCATGTGCTTACTGTTAAAGCTGGCGAGGATGTTAATATGAAGGTCATGTCCTTCTCTCAACATGGATCTCGTGCTATTTGTATTCTTTCTGCAAATGGAACAATTTCAAATGTTACACTGCGTCAACCAACTTCTTCCGGGGGTACCTTAACATATGAGGGGCGATTTGAGATTCTTTCTTTGTCTGGTTCCTATATGCCTTCTGAGAACGGCGTGACAAGAAGTAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCTGATGGTCGAGTTGTGGGAGGTGGCCTTGCTGGTCTGTTGGTAGCGGCAGGTCCTGTGCAGGTTGTTGTGGGGAGTTTTCTACCAGGCCACCAGCAGATGCAGAAACCGAAGAAGCAAAAGACGAATCATTTTTCGCCAGTGACATCTGGACACTATAATCCCATCCCAGTTGATGAAATAAAGATCAGTTTCGGAGGCGTAAAGCCTATTATGACTCCTGCTGCATTTCAAGCAGACAACAACACTGCTTCTTTTAACAACGTCCCGGGCTCTAGCAACTCATCTGCTGATGACGATGATGATGATGCTGATGTTGACGATGACGATGATATAACACTTTATCCTGAAAAGGACTCTAACCCAAGCCAAACAAATGCCGGAGTCGCATGCTAA 1158 0.5035 MEEKDSFFSGLTVKANDAPESHHITPRSGNYGLFGGPTGASPSPAPAPAPAPAPTPAPTTAPALARAPVPDSVSAPEAVSAAAAAGSTDVVKKKRGRPRKYGPDGKLALALSPMPISSSIPLTGDYSMWKRGRGRPVQSVKKSSFKCDFESPGPGDGIAYSVGANFTPHVLTVKAGEDVNMKVMSFSQHGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSENGVTRSRSGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQMQKPKKQKTNHFSPVTSGHYNPIPVDEIKISFGGVKPIMTPAAFQADNNTASFNNVPGSSNSSADDDDDDADVDDDDDITLYPEKDSNPSQTNAGVAC 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2020 385 MobiDBLite consensus disorder prediction 286 305 - -
Lele05g2020 385 MobiDBLite consensus disorder prediction 83 106 - -
Lele05g2020 385 Pfam Plants and Prokaryotes Conserved (PCC) domain 168 281 IPR005175 -
Lele05g2020 385 MobiDBLite consensus disorder prediction 287 304 - -
Lele05g2020 385 MobiDBLite consensus disorder prediction 41 63 - -
Lele05g2020 385 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 58 350 IPR039605 GO:0003680
Lele05g2020 385 MobiDBLite consensus disorder prediction 336 385 - -
Lele05g2020 385 Gene3D - 168 299 - -
Lele05g2020 385 MobiDBLite consensus disorder prediction 350 368 - -
Lele05g2020 385 MobiDBLite consensus disorder prediction 371 385 - -
Lele05g2020 385 FunFam AT-hook motif nuclear-localized protein 1-like 168 299 - -
Lele05g2020 385 SMART AT_hook_2 92 104 IPR017956 GO:0003677
Lele05g2020 385 SMART AT_hook_2 130 142 IPR017956 GO:0003677
Lele05g2020 385 CDD DUF296 167 281 IPR005175 -
Lele05g2020 385 MobiDBLite consensus disorder prediction 1 70 - -
Lele05g2020 385 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 287 - -
Lele05g2020 385 ProSiteProfiles PPC domain profile profile. 163 302 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2020 Lele-ChrLele05 14422088 14425876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2020 71 329 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 56.554 7.80e-89 272