Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1998 ATGGTCGTTTGTGGTGGTAAGCCCATGAAGCGGATGAAGAGGAGAGTCACGGCCGATTTCTACGATTTTCTCACTTTTCCGTCCCCTTCAGTCGCTGCAGAAGAGGACTTCTCCGGTGGACCCTTTCGGACGAACGTGAGATCTTTTCTATCGAAGCACGCGCTGCTTCCACCGCCTTCGGCTCTGTTCCCTCACCTGCTGACGTGGCAGATCCTGTTCCGAGTCGGTGACCTGACGGACGGCCCGGAGTCGAGTCCAGCGGTGGTTTGCCTCGACGTTGTCGAAGAAGATGTGGCCAGATCTAGATCCGTCTACTGCGATCAGTGCCGAGTTGTTGGTTGGAGTGGCCATCCAGTATGCGGAAAACGGTACCATTTTATAATCAAGTCTGATGGAACTTCCATTGGTGGGTACCATAAGCCATGTATGTGCTGTGGAGATATCTTGCACCTGTCAGAATCCAAGTGCAAGTCATGCAACCATGTGACAACTACGGATGATGTTGAAGACTGGGTCTATCACCAGTTAGAAAGCACAACTCATCTTTTACATGGTGTAGTCCATGCTAATGGTTATGGTCACCTTCTTCGAGTTAATGGTAGAGAAGGTGGCTCAAAATTTCTTTCTGGGTGCCATATCATGGACTTCTGGGATCGCCTCTGCAAGACACTTGGAGTTAGAAAAGTTAGCGTGATGGATGTGTCAAAGAAGTATGGGTTGGAGTATCGGCTGCTCCGTGCTGTTACAAAAGGACACCCTTGGTATGGTGATTGGGGTTATCAATTTGGTTCTGGTAGCTATGGTCTTACACACGAATCATACAGGTCTGCTGTTGACTTCCTGTCCAATTTGCCGTTGTCCACCTTTCTTTCCTCCAGGCAGAAATGCGATTCCCGTGTACAAGACATGATCTCTTATTACCAGTCTTTGTCAAAGAATGAGCTTGTAAATATAAGGGACTTCTTTTGTTTTTTAATGGGTTTGATTCATGATGCCCGCAAGACTGCTGCATCAAAGAATATTGATGACATCAACTGCAAGAAACGACGTGTGAATGCTACAGGAGTGTCTTCATCATGGACTAAGAGTGATGTTGAATGTGTGGAGGAGGCCATGCTCAGAGTGCTGCGAGCTGTGTCTGGGTCCAATTGGGTGAGCTGGCGTGCTCTTAGGGGTGCTGTCTGCAAGGTGGCCTCTCCGGAACTGCTTGATTATTGCCTCGGAGAATTGGGAGGAAAAGTGGTCCTTGGAGCAATGGTGAATACCCGATGCAATCCTGTTACTGGTGCTTTTGAGTACAGATTAGAGACAGGGAACAATTCTCTCCATGGAAATGCAAGCAATATTTCTTCAGGCCTAAAGTATCCAGCTGAAGTGACTCTTCTACATGACTTGAGATACTTGTATAATTCTCTTCTTCATCCTCAGATGATGTTGACCTTTGATCCAGAGGAGACAAGGGCAATTGCCATGAGCTCTGCTCAGAAACTTATTGACTGCAAGCAGTTTGTAAAGGACTTTAGACCTGAGATGATGCCGCTGACAAACCCGTCTAAGATACGCTTCTCATGTCAAATAGAACTAGAAGATGAATCTGAAGATTTTGTCGCACGCCTTCCACCAGAACTAGTTATCCTCCCTGTAAATGCCACCGTATCTGATCTCAAGGTTGAAGCGGCAAACGCTTTTCAAGATGCATATGCCATGTTCAGAAGACTTCAAATTGATGATCTACTTGACTATAATCTCGATGATTCCTCCCCAGTCAAGCACTTGTCAGGATCTATGATGGACGCAGTCCGGCTGCGAGGAAGATGCACTGGCAAGAATGGGTTAGGCAAATTCCAAATGGAGCGGGGCATCGAGAGGTGGACTGTGGATTGCAGCTGTGGGGCGAAGGACGATGATGGAGAGAGAATGTTGGCTTGTGATATATGTGGAGTGTGGAGACACACTAGGTGTTCTGATATTCATGATGCAGATCCTGTACCTGCACGGTTCGTCTGTCCAAGATGCCTAAACCGTGACTTCAAACCCAAATCTAATGGGGATGAGATTGTGAATGATATTATGACCACTAACAAGAACTGCTTTGAAAACTGCTTGCTGGTGCCATCTGATGTTCGTTGA 2130 0.4695 MVVCGGKPMKRMKRRVTADFYDFLTFPSPSVAAEEDFSGGPFRTNVRSFLSKHALLPPPSALFPHLLTWQILFRVGDLTDGPESSPAVVCLDVVEEDVARSRSVYCDQCRVVGWSGHPVCGKRYHFIIKSDGTSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLESTTHLLHGVVHANGYGHLLRVNGREGGSKFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLRAVTKGHPWYGDWGYQFGSGSYGLTHESYRSAVDFLSNLPLSTFLSSRQKCDSRVQDMISYYQSLSKNELVNIRDFFCFLMGLIHDARKTAASKNIDDINCKKRRVNATGVSSSWTKSDVECVEEAMLRVLRAVSGSNWVSWRALRGAVCKVASPELLDYCLGELGGKVVLGAMVNTRCNPVTGAFEYRLETGNNSLHGNASNISSGLKYPAEVTLLHDLRYLYNSLLHPQMMLTFDPEETRAIAMSSAQKLIDCKQFVKDFRPEMMPLTNPSKIRFSCQIELEDESEDFVARLPPELVILPVNATVSDLKVEAANAFQDAYAMFRRLQIDDLLDYNLDDSSPVKHLSGSMMDAVRLRGRCTGKNGLGKFQMERGIERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDADPVPARFVCPRCLNRDFKPKSNGDEIVNDIMTTNKNCFENCLLVPSDVR 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1998 709 CDD PHD_MMD1_like 627 672 - -
Lele05g1998 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 678 IPR013083 -
Lele05g1998 709 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 682 - -
Lele05g1998 709 SMART PHD_3 627 673 IPR001965 -
Lele05g1998 709 SUPERFAMILY FYVE/PHD zinc finger 618 676 IPR011011 -
Lele05g1998 709 Pfam PHD-finger 628 674 IPR019787 -
Lele05g1998 709 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1998 Lele-ChrLele05 14245782 14250774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1998 85 672 PHD Transcription Factor Family AT5G22260 29.094 1.02e-81 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele05g1998 PHD 2.6e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1998 05 14245782 14250774 Lele07g2045 07 13711556 13716575 hybridization
Lele05g1998 05 14245782 14250774 Lele08g1838 08 12772629 12774663 hybridization