Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1996 ATGGAGTCTAGAACTGTTCATATTGATGAAAAGAGGCCAAGCGGGGAGGAGCTTTATGGTCCGAAGAAGAAGAAGAAGACGATAATTATAAGGTACAGAGAATGCATGAAGAACCATGCAGCTTCAATAGGAGGGAATGCAACAGATGGTTGTGGTGAGTTCATGGCTTCTGGAGAAGAAGGCACACCTGAATCTCTCAAGTGCTCGGCCTGCAAATGCCATAGAAACTTCCACAGAAAACAATTTGATGAATCTGATGAAGATTCTGATGATACCCCTAATTCTTCTCCATATTATGATTCTCGTCACCACCACCACCATCTTCTTAATCTTCCTTCTTCACAGACGATTCTTCCAAATAATGACGGTGCTGGTGATCATGATCAGGTAGTGAAACCTTTATTGATCCATGATTTGTGTCTCACAAGTTATAATAAAAGTTGTTCAGATCATGAGTCTGATGAAAAGAGGAAGAGGTTCAGGACTAAGTTCAGTGAAGAGCAGAAGGAGAAGATGCTGAGATTTGCAGAGAAGGTTGGGTGGAAAATGCAGAAAGTTGATGAATCCATGGTTCAGCAGTTTTGTGAAGAAGCTGGAATCAAGAGAAGAGTACTCAAAGTGTGGATGCACAATAACAAGAACAATTTTGCCAAGAGAAACAGCCTCATATCCACTAGCTAG 681 0.4126 MESRTVHIDEKRPSGEELYGPKKKKKTIIIRYRECMKNHAASIGGNATDGCGEFMASGEEGTPESLKCSACKCHRNFHRKQFDESDEDSDDTPNSSPYYDSRHHHHHLLNLPSSQTILPNNDGAGDHDQVVKPLLIHDLCLTSYNKSCSDHESDEKRKRFRTKFSEEQKEKMLRFAEKVGWKMQKVDESMVQQFCEEAGIKRRVLKVWMHNNKNNFAKRNSLISTS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1996 226 MobiDBLite consensus disorder prediction 82 103 - -
Lele05g1996 226 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 31 81 IPR006456 -
Lele05g1996 226 SUPERFAMILY Homeodomain-like 149 218 IPR009057 -
Lele05g1996 226 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 157 214 IPR006455 -
Lele05g1996 226 Pfam ZF-HD protein dimerisation region 30 81 IPR006456 -
Lele05g1996 226 Gene3D - 142 218 - -
Lele05g1996 226 ProSiteProfiles 'Homeobox' domain profile. 155 219 IPR001356 GO:0003677
Lele05g1996 226 FunFam Zinc-finger homeodomain protein 2 144 218 - -
Lele05g1996 226 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 32 81 IPR006456 -
Lele05g1996 226 MobiDBLite consensus disorder prediction 1 20 - -
Lele05g1996 226 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1996 Lele-ChrLele05 14216127 14216807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1996 23 224 ZF-HD Transcription Factor Family AT2G02540 46.009 4.62e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele05g1996 ZF-HD_dimer 2.6e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1996 05 14216127 14216807 Lele46g0342 46 2316553 2319522 CCT
Lele05g1996 05 14216127 14216807 Lele48g1137 48 16015042 16018391 CCT
Lele05g1996 05 14216127 14216807 Lele07g2042 07 13693008 13694183 hybridization
Lele05g1996 05 14216127 14216807 Lele08g1835 08 12746867 12747547 hybridization