Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1988 ATGTCTTGTTCCATAGCAGGTTTTCAACAAGCCCGTTTCACACCTCAGCTTACCCGTGGTCGTCAACCTCCTTCCCCATTTGCCCCCGGCAACTCCTTTTCCCATCCCCTGTTTCACCGCTCCGGTGACCTATACTTCGCGGCTGCTGTTGCCTGCTCTCCCGTGCTTACTCCTCGACGTTGCTCTCGAATTTCAGCTCATTGTCTTCAAGTGTTTTACTTGGGTCACAAGCTTTCTATCCTCTCAAACATGGCTACCAGACTTATGTTTGAGAACTCTTGTGAAGTTGGAGTGTTCTCTAAACTTACGAATGCCTATTGTTTGGTTGCTATCGGAGGTTCTGAAAGCTTCTACAGTGTATTTGAGTCTGAATTAGCAGGTGTTATCCCTGTGGTGAAGACCTCCATTGCTGGCACTCGTATTATTGGCCGCCTTTGTGCTGGAAACAAAAATGGGCTTCTCTTACCACACAATACCACAGACCAAGAACTTCAACATTTGAGAAACAGTCTACCAGATCAAGTTGTTGTTCAGCGTGTAGAAGAAAGATTATCTGCTCTTGGAAATTGTATAGCGTGTAATGACCATGTGGCACTCGCGCACACTGATCTTGACAGGGAAACTGAAGAGCTGATTTCAGACATCCTGGGAGTAGAAGTTTTCAGGCAGACCATTGCCGGAAATATTCTTGTAGGAAGTTTCTGCGCCTTCTCCAACAGAGGCGGTTTGGTTCACCCTCATACTTCTATCGAAGACTTGGATGAGCTCTCAACACTTCTTCAGGTTCCTTTGGTTGCTGGGACTGTGAATCGTGGCAGTGAGGTCATAGCCGCTGGCATGACTGTTAATGACTGGACTGCCTTCTGTGGATCAGACACAACAGCAACAGAACTCTCTGTGGTTGAGAGTGTTTTCAAGCTTAGGGAAGCTCAACCTAGTGCTATCGTGGATGAGATGAGGAGATCGCTTATTGATAGCTACGTTTAA 987 0.4671 MSCSIAGFQQARFTPQLTRGRQPPSPFAPGNSFSHPLFHRSGDLYFAAAVACSPVLTPRRCSRISAHCLQVFYLGHKLSILSNMATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSVFESELAGVIPVVKTSIAGTRIIGRLCAGNKNGLLLPHNTTDQELQHLRNSLPDQVVVQRVEERLSALGNCIACNDHVALAHTDLDRETEELISDILGVEVFRQTIAGNILVGSFCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVVESVFKLREAQPSAIVDEMRRSLIDSYV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1988 328 Pfam eIF-6 family 87 286 IPR002769 GO:0042256|GO:0043022
Lele05g1988 328 Gene3D - 84 308 - -
Lele05g1988 328 FunFam Eukaryotic translation initiation factor 6 84 308 - -
Lele05g1988 328 Hamap Translation initiation factor 6 [eif6]. 73 328 IPR002769 GO:0042256|GO:0043022
Lele05g1988 328 TIGRFAM eIF-6: putative translation initiation factor eIF-6 87 307 IPR002769 GO:0042256|GO:0043022
Lele05g1988 328 CDD IF6 85 306 IPR002769 GO:0042256|GO:0043022
Lele05g1988 328 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 84 327 IPR002769 GO:0042256|GO:0043022
Lele05g1988 328 SUPERFAMILY Pentein 84 307 - -
Lele05g1988 328 SMART eIF6neu2 86 287 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1988 Lele-ChrLele05 14150661 14154725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1988 84 328 Eukaryotic Initiation Factors Gene Family AT3G55620 88.163 9.65e-167 462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1988 05 14150661 14154725 Lele13g1700 13 25593394 25598942 CCT
Lele05g1988 05 14150661 14154725 Lele14g1642 14 23989706 23995384 CCT
Lele05g1988 05 14150661 14154725 Lele15g0713 15 4116922 4122457 CCT
Lele05g1988 05 14150661 14154725 Lele16g0720 16 4054315 4059996 CCT
Lele14g1634 14 23930618 23937111 Lele05g1988 05 14150661 14154725 CCT
Lele15g0722 15 4171883 4179143 Lele05g1988 05 14150661 14154725 CCT
Lele16g0729 16 4111822 4119496 Lele05g1988 05 14150661 14154725 CCT
Lele05g1988 05 14150661 14154725 Lele05g1988 05 14150661 14154725 ECH
Lele05g1988 05 14150661 14154725 Lele06g1822 06 12786972 12790175 ECH
Lele05g1988 05 14150661 14154725 Lele07g2037 07 13622866 13627718 hybridization
Lele05g1988 05 14150661 14154725 Lele08g1827 08 12662664 12665889 hybridization
Lele05g1988 05 14150661 14154725 Lele08g1828 08 12677415 12685270 hybridization