Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1980 ATGAGGTACTCTTTGGTAGACGGAGTTTCAAAGAAGAGGAAAAGAATGGCAACACGTAGATACGCGTTCGGAAGGGTCGATGAAGCAACACATCCGGACTCCGTGAGAGCCACCGTTGCTGAGTTTGTCTCCACTTGTATCTTTGTCTTCATAGGAGAAGGCTCCATCCTCGCACTGGACAAGATATATAGGGATTCAGGGACGTCAGCGGCGGAGCTGATGGCGGTAGCAGCAGCGCATGCGTTTGGTTTGTTTGCGGCGGTAGCGGCGAGCATGCATGTTTCGGGAGGGCATGTCAACCCTGCCGTGACATTCGGAGCTCTTCTCGGCGGAAGGATATCGGTGCTGCGAGCAGTGTACTACTGGGTGGCTCAACTCCTCGGAGCTATCGTCGCCGCTCTGTTGCTCAGGCTTGTCACCAATAACATGAGACCAGCGTCGTTCTCGTTGGCAATAGGGGAGGGTGCGATGCACGCGCTGATATTGGAGATAGTGATGACGTTCGGCCTGATGTACACCGTTTATGGCACCGCCATTGACCCGAAAAGAGGTACTAATGGGGCTCTAGCCCCACTGGCAATTGGGCTCATAGTTGGGGCCAACATCCTCGTTGGTGGGCCTTTTGACGGGGCCTGCATGAACCCAGCTCGGGCTTTTGGGCCTTCCTTAGTGGGCTGGAGATGGCACTACCACTGGATCTACTGGGTCGGCCCACTCATTGGAGCTGGTCTTGCAGCTCTCGTCTATGAATACATCGTGATCCCCACCGAGCCACCTCATCCTCACCAACCTCTCGCTCCTGAAGATTATTGA 813 0.5486 MRYSLVDGVSKKRKRMATRRYAFGRVDEATHPDSVRATVAEFVSTCIFVFIGEGSILALDKIYRDSGTSAAELMAVAAAHAFGLFAAVAASMHVSGGHVNPAVTFGALLGGRISVLRAVYYWVAQLLGAIVAALLLRLVTNNMRPASFSLAIGEGAMHALILEIVMTFGLMYTVYGTAIDPKRGTNGALAPLAIGLIVGANILVGGPFDGACMNPARAFGPSLVGWRWHYHWIYWVGPLIGAGLAALVYEYIVIPTEPPHPHQPLAPEDY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1980 270 PRINTS Major intrinsic protein family signature 232 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1980 270 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1980 270 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1980 270 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1980 270 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1980 270 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1980 270 Gene3D Glycerol uptake facilitator protein. 19 259 IPR023271 -
Lele05g1980 270 PANTHER AQUAPORIN-8 21 257 IPR034294 -
Lele05g1980 270 Pfam Major intrinsic protein 29 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1980 270 CDD MIP 36 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1980 270 FunFam Probable aquaporin TIP1-1 19 266 - -
Lele05g1980 270 SUPERFAMILY Aquaporin-like 28 261 IPR023271 -
Lele05g1980 270 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Lele05g1980 270 TIGRFAM MIP: MIP family channel proteins 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1980 Lele-ChrLele05 14048396 14050199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1980 17 270 Major Intrinsic Protein MIP AT1G73190 69.697 5.61e-123 350