Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele05g1924 | ATGGTGAGAAAGAAGAGAACTGAAGGTCCTAGTGGAGGAGGTGAAAGCTCTGAGACTCGTGAAAGTGGGGGAAGTGGAAGAGGAGGTTATCAGCGACCTCCAGAAAGGAGTGCTCAAGGCCCTCAACAGTCTGCTGGAGGACCCCAAGGAGGTAGAGGCTGGTATCCTCAAGGAGGGCGTGGCGGTTATGGGGGACGTGGTCGGGGTTCACCCCAACAGCAGTACAGTGCCCCCCCTGATTATCAAGGCAGGGGGAGGGGAGTATCTTCTCAACAGGGAGGTCGAGTTGGATTTCGTGGTGGTCGGGATGGTGCGGGCATAAGTGGACGTGTTGGAGGACCTTCATATGGTGTCCCATCCCGACCAGAAGTTCCCGAGCTGCACCAAGCAACCTCAGCTTCATATCAAGCTGGGGTGACTCCTCAGTCTCCGATGCCTGAGGCAAGTTCTGTTTCACAACTTTCTGAGATGACACATGTGGAACAGCAAACTAAGCAGTTAACCATTCATCCAGAAGTTTCTTCTGCCCCCCCAGCCTCAAGTAAATCAGTGAGGTTTCCCCTTCGGCCTGGAAAGGGTAGCTATGGCACAAAGTGTGTAGTCAAAGCTAACCACTTCTTTGCTGAGTTACCTAACAAAGATCTTCACCAGTACGATGTAACCATAACTCCAGAAGTGCCATCCAGAGGTGTAAACCGTGCTGTTATGGAGCAGCTGGTTAGGCTTTACCGTGAGTCTCATCTAGGCATGAGATTACCTGCATATGATGGTCGCAAGAGCCTGTACACTGCTGGTCCTCTTCCTTTTGTTTCAAATGAGTTTAGAATCACTCTCATTGATGAAGAGGATGGAGCAGGAGCAGGAGTTCAAAGGAGAGTGAGGGATTTCAGAGTTGTCATAAAATTAGCTGCCCGAGCTGACCTTCACCACTTAGGGATGTTTTTGCAAGGAAGACAAACAGATGCACCTCAGGAAGCCCTTCAGGTTCTTGACATTGTTCTGCGTGAGCTACCCACCACCAGGAGGCAAACGTTAGGTGAAGGTTTGGAGAGCTGGCGTGGGTTTTACCAAAGCATTCGTCCAACTCAGATGGGATTGTCACTCAATATTGATATGTCGTCAACAGCATTTATTGAACCATTGCCAGTAATTGATTTTGTAACTCAGCTGCTGAACAGGGATGTCACCAGCCGTCCATTATCTGATGCTGATCGTGTAAAGATCAAAAAAGCACTTCGTGGTGTCAAAGTTGAAGTAACACACCGTGGAAACATGAGAAGAAAATATCGCATCTCTGGTCTGACGTCACAGGCAACTAGAGAGCTGACATTCCCTGTTGATGAGAGGGGGACTGTGAAATCTGTTGTGGAGTACTTTTATGAGACATACGGATTTGTCATTCAACATACTCAGTGGCCTTGCTTACAAGTGGGGAATACAAATAGACCGAACTATTTACCAATGGAGGTTTGCAAGATTGTAGAAGGTCAAAGGTACTCAAAGAGGTTGAATGAGAGGCAGATTACTGCTTTGCTTAGAGTCACCTGTCAGAGGCCTGTTGATAGGGAGCGAGATATCATGCAGACGGTTCATCATAATGCGTACCATCAAGATCCCTATGCTAGAGAGTTTGGAATCAAAATCAGTGAGAAACTTGCACAAGTTGAAGCTCGCATTCTTCCTGCACCTTGGCTGAAGTATCATGATACAGGAAGAGAAAAGGATTGTCTTCCTCAAGTTGGACAGTGGAACATGATGAATAAGAAAATGGTCAATGGGGGGACCGTTAACAACTGGATCTGCATTAATTTTTCAAGGAATGTTCAAGACACTGTGGCCAGTGGCTTTTGTTCTGAACTTGCACATATGTGTTATATATCTGGCATGGAATTTAAGCCAAAGCCAGTACTTCCTGTGATCAGTGCCCGCCATGACCAGGTTGATAATGTTCTGAATTCACGCTATCATGATGCCAAGACAAGGCTGATGGACAAGGATCTTGATCTGCTTATTGTTATTTTGCCTGACAATAATGGCTCTCTTTATGGTGATCTGAAACGTATTTGTGAGACGGAACTTGGGGTTGTTTCCCAGTGCTGTTTGACAAAACATGTCTTTAAAATGAACAAGCAGTACCTTGCAAATGTTGCTTTAAAAATCAACGTGAAGGTTGGTGGAAGGAACACAGTGCTTGTTGATGCACTTTCAAGACGCATACCTTTGGTTAGTGACCGACCCACTATTATATTTGGAGCTGATGTTACTCATCCACACCCTGGGGAGGATTCTAGTCCATCTATAGCGGCTGTTGTGGCATCTCAAGATTGGCCTGAAGTCACCAAGTATTCTGGTTTGGTTTGTGCTCAAGCGCACAGGCAGGAGCTCATCCAAGACCTTTTCAAACAGTGGCAAGATCCAGATAAGGGGATAGTAGCTGGTGGAATGATCAAGGAGCTTCTCATATCATTTCGAAGAGCCACGGGGCAGAAGCCACAACGCATCATCTTTTACAGGGATGGTGTGAGTGAGGGGCAATTTTATCAAGTTTTACTTTTTGAGCTTGATGCTATCCGCAAGGCATGTGCATCATTAGAACCTAACTATCAGCCTCCTGTAACTTTTGTGGTGGTTCAAAAGCGCCATCACACGAGGCTGTTTGCTAACAACCATCATGATCGGAATTCGGTTGACCGAAGTGGGAATATATTACCTGGTACTGTTGTAGACTCCAAAATTTGTCATCCAACTGAGTTCGACTTCTATCTTTGTAGTCATGCTGGGATACAGGGTACAAGCCGACCTGCCCATTACCATGTGTTATGGGACGAAAACAATTTTAGTGCCGATGCACTTCAGACACTTACTAACAACCTCTGCTACACTTATGCAAGATGCACGAGATCTGTTTCAATTGTGCCTCCTGCTTACTACGCACACTTGGCTGCTTTCCGAGCTCGATTTTATATGGAACCTGCTACATCGGATAGTGAGTCAATGAGTGCTGCTGCCGGACGTGGAGCGGGTGGCGGACCAGGACGTAGCACTCGTGCACCTGGTGCAAATGCTGCTGTCAGGCCTCTTCCTGCTCTTAAAGATAATGTGAAGAGGGTCATGTTTTATTGTTAA | 3126 | 0.4648 | MVRKKRTEGPSGGGESSETRESGGSGRGGYQRPPERSAQGPQQSAGGPQGGRGWYPQGGRGGYGGRGRGSPQQQYSAPPDYQGRGRGVSSQQGGRVGFRGGRDGAGISGRVGGPSYGVPSRPEVPELHQATSASYQAGVTPQSPMPEASSVSQLSEMTHVEQQTKQLTIHPEVSSAPPASSKSVRFPLRPGKGSYGTKCVVKANHFFAELPNKDLHQYDVTITPEVPSRGVNRAVMEQLVRLYRESHLGMRLPAYDGRKSLYTAGPLPFVSNEFRITLIDEEDGAGAGVQRRVRDFRVVIKLAARADLHHLGMFLQGRQTDAPQEALQVLDIVLRELPTTRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVTSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTVKSVVEYFYETYGFVIQHTQWPCLQVGNTNRPNYLPMEVCKIVEGQRYSKRLNERQITALLRVTCQRPVDRERDIMQTVHHNAYHQDPYAREFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRNVQDTVASGFCSELAHMCYISGMEFKPKPVLPVISARHDQVDNVLNSRYHDAKTRLMDKDLDLLIVILPDNNGSLYGDLKRICETELGVVSQCCLTKHVFKMNKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYSGLVCAQAHRQELIQDLFKQWQDPDKGIVAGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPATSDSESMSAAAGRGAGGGPGRSTRAPGANAAVRPLPALKDNVKRVMFYC | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele05g1924 | 1041 | Pfam | Glycine-rich region of argonaut | 78 | 176 | IPR024357 | - | |
| Lele05g1924 | 1041 | SMART | Piwi_a_2 | 669 | 990 | IPR003165 | GO:0003676 | |
| Lele05g1924 | 1041 | MobiDBLite | consensus disorder prediction | 1 | 188 | - | - | |
| Lele05g1924 | 1041 | SMART | PAZ_2_a_3 | 385 | 517 | IPR003100 | GO:0005515 | |
| Lele05g1924 | 1041 | Pfam | PAZ domain | 385 | 510 | IPR003100 | GO:0005515 | |
| Lele05g1924 | 1041 | CDD | Piwi_ago-like | 539 | 989 | IPR045246 | - | |
| Lele05g1924 | 1041 | Pfam | Mid domain of argonaute | 578 | 652 | IPR032473 | - | |
| Lele05g1924 | 1041 | Gene3D | paz domain | 374 | 499 | - | - | |
| Lele05g1924 | 1041 | MobiDBLite | consensus disorder prediction | 69 | 89 | - | - | |
| Lele05g1924 | 1041 | ProSiteProfiles | Piwi domain profile. | 669 | 990 | IPR003165 | GO:0003676 | |
| Lele05g1924 | 1041 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 175 | 991 | - | - | |
| Lele05g1924 | 1041 | SUPERFAMILY | PAZ domain | 375 | 535 | IPR036085 | GO:0005515 | |
| Lele05g1924 | 1041 | FunFam | protein argonaute 10-like | 738 | 1041 | - | - | |
| Lele05g1924 | 1041 | ProSiteProfiles | PAZ domain profile. | 381 | 495 | IPR003100 | GO:0005515 | |
| Lele05g1924 | 1041 | Pfam | Argonaute linker 2 domain | 521 | 567 | IPR032472 | - | |
| Lele05g1924 | 1041 | Gene3D | - | 559 | 732 | - | - | |
| Lele05g1924 | 1041 | SUPERFAMILY | Ribonuclease H-like | 655 | 991 | IPR012337 | - | |
| Lele05g1924 | 1041 | FunFam | Protein argonaute-2 | 374 | 500 | - | - | |
| Lele05g1924 | 1041 | Pfam | Piwi domain | 670 | 989 | IPR003165 | GO:0003676 | |
| Lele05g1924 | 1041 | Gene3D | - | 738 | 1041 | IPR036397 | GO:0003676 | |
| Lele05g1924 | 1041 | FunFam | Argonaute 10 | 559 | 732 | - | - | |
| Lele05g1924 | 1041 | CDD | PAZ_argonaute_like | 380 | 494 | - | - | |
| Lele05g1924 | 1041 | MobiDBLite | consensus disorder prediction | 127 | 181 | - | - | |
| Lele05g1924 | 1041 | SMART | DUF1785_2 | 302 | 380 | IPR014811 | - | |
| Lele05g1924 | 1041 | MobiDBLite | consensus disorder prediction | 999 | 1021 | - | - | |
| Lele05g1924 | 1041 | Pfam | N-terminal domain of argonaute | 197 | 334 | IPR032474 | - | |
| Lele05g1924 | 1041 | Pfam | Argonaute linker 1 domain | 340 | 379 | IPR014811 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele05g1924 | Lele-ChrLele05 | 13400145 | 13405990 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele05g1924 | 121 | 1041 | Eukaryotic Initiation Factors Gene Family | AT1G48410 | 79.852 | 0.0 | 1557 |