Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1920 ATGGCAACCACTGTTTCTCCCACAACTCCTGGAACTTCGTTACCGGTTTCTTTCCGCAACAATATTCCTAGAATCAGAATTAGTGAGGCTAACATTCGAAGCAACAGAAATTTCCCTTCTTCATCACTCAGAAATGGCTCCTCCTTCGCCTTCGCGTGTTTACCTCATCCTCCTCCTCAACCACCAACCCCATCTTCCAATACCGGACCCATTTCTTCTCCTTCAACTAAGCTCTACGTCAGTGGACTATCTTTTCGCACCACTGAAGAGAGCTTGCGAAATGCCTTTAAGAAGTTTGGTGAACTTGTGGAAGTCAACCTGGTGATGGATAAAATAGCTAATAGACCAAGAGGATTTGCCTTTCTTCGTTATGCAACTGAAGAGTATTCTCGGAAGGCTATTGACGGAATGCATGGGAAGTTCTTGGATGGTGGGGTCATATTTGTGGAAGTTGCAAAACCAAGATCAGAGTTGCGCCAAAGGCTTAACCAAAACCCTAGATAG 504 0.4484 MATTVSPTTPGTSLPVSFRNNIPRIRISEANIRSNRNFPSSSLRNGSSFAFACLPHPPPQPPTPSSNTGPISSPSTKLYVSGLSFRTTEESLRNAFKKFGELVEVNLVMDKIANRPRGFAFLRYATEEYSRKAIDGMHGKFLDGGVIFVEVAKPRSELRQRLNQNPR 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1920 167 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 145 IPR000504 GO:0003723
Lele05g1920 167 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 154 IPR000504 GO:0003723
Lele05g1920 167 SMART rrm1_1 77 150 IPR000504 GO:0003723
Lele05g1920 167 MobiDBLite consensus disorder prediction 51 74 - -
Lele05g1920 167 MobiDBLite consensus disorder prediction 54 68 - -
Lele05g1920 167 SUPERFAMILY RNA-binding domain, RBD 51 164 IPR035979 GO:0003676
Lele05g1920 167 PANTHER NUCLEOLAR PROTEIN 8 58 160 - -
Lele05g1920 167 Gene3D - 63 167 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1920 Lele-ChrLele05 13358818 13361368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1920 78 134 C2H2 Transcription Factor Family AT2G19380 36.842 2.57e-09 53.5