Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1905 ATGTGCAGTAGAGGTCATTGGAGGCCAGCCGAGGATGAGAAACTTCGAGAATTGGTGGAGCGTTATGGACCTCATAACTGGAACGCCATAGCCGAAAAGCTTCGAGGAAGATCAGGGAAGAGCTGCAGGTTGAGGTGGTTCAATCAACTGGACCCAAGAATAAATAGGAGTCCATTCACAGAGGAAGAAGAAGAGAGGCTTGTGTCATGTCACAGAATGCATGGAAACAGATGGGCAGTGATAGCGAGGCATTTTCCAGGAAGAACTGATAATGCTGTCAAGAATCACTGGCACGTTATGATGGCTCGGGTTCGCCGTGAAAGCTCAAAGTTGTCTTCCAAACGCCCTCTTCATCATCATCATCAACAGTGTTCTCCACCCCCAATATCATCAGATCCAACTGCTAACAGTAGCGTTGTTCCTTCTTTCGTTGAGAAATACTACGACAAGCATGCCTTCCCTGCTTATTGTCTCCCTTATAACCCCTTCGTCCTTCAATTCCCCAACAAGTTTCTTCATCTTCAACTTCCAACTCGCTCTTCATCAGTACTTCATGAAAAAGGTGAATCAGTTGAGTTCTACGACTTTCTTCAAGTGAACGCAGATTCTAATAATAGAAGCGAGGTGACAGACAATGCCAGAAGAGAAGACGAGGAAGTGAATCAAGATAGTGAACAACATAATAGTGTGGGAGAACGAGGACGACAGAACAAAGACGGCAGCAGCGACGGTGTTCCCTTTATCGATTTTTTGTCTGTTAATGGAAGCTCCTAA 774 0.4535 MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLVSCHRMHGNRWAVIARHFPGRTDNAVKNHWHVMMARVRRESSKLSSKRPLHHHHQQCSPPPISSDPTANSSVVPSFVEKYYDKHAFPAYCLPYNPFVLQFPNKFLHLQLPTRSSSVLHEKGESVEFYDFLQVNADSNNRSEVTDNARREDEEVNQDSEQHNSVGERGRQNKDGSSDGVPFIDFLSVNGSS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1905 257 Gene3D - 57 122 - -
Lele05g1905 257 MobiDBLite consensus disorder prediction 108 136 - -
Lele05g1905 257 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Lele05g1905 257 SMART sant 55 103 IPR001005 -
Lele05g1905 257 SMART sant 3 52 IPR001005 -
Lele05g1905 257 MobiDBLite consensus disorder prediction 208 239 - -
Lele05g1905 257 PANTHER MYB PROTEIN-RELATED 4 139 - -
Lele05g1905 257 FunFam MYB transcription factor 4 55 - -
Lele05g1905 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Lele05g1905 257 MobiDBLite consensus disorder prediction 204 257 - -
Lele05g1905 257 Gene3D - 4 55 - -
Lele05g1905 257 Pfam Myb-like DNA-binding domain 4 50 IPR001005 -
Lele05g1905 257 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Lele05g1905 257 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Lele05g1905 257 CDD SANT 58 101 IPR001005 -
Lele05g1905 257 CDD SANT 7 48 IPR001005 -
Lele05g1905 257 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Lele05g1905 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1905 Lele-ChrLele05 13169489 13171241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1905 1 257 MYB Transcription Factor Family AT1G17950 51.661 2.74e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele05g1905 Myb_DNA-binding 1.3e-15 CL0123