Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1890 ATGTCATCAGTTCCAAACTCCGAGCAGTTTTCCACCGCAGATAATGGGACTAACACCAGTACTACTGCAAACAAACGAAAGAGAAGACCCGCAGGAACACCAGATCCAGATGCGGAGGTGGTGTCGCTGTCGCCGAAGACGCTATTGGAATCGGACCGGTACGTGTGCGAGATCTGTAACCAGGGGTTTCAGAGGGACCAGAACCTGCAGATGCACAGGAGGAGGCATAAGGTTCCCTGGAAGCTGCTAAAGAGGGAGACACCGGTAGCGAGGAAGAGAGTGTTTGTTTGCCCGGAACCGACCTGCTTGCACCACGACCCTTGCCACGCCCTCGGTGACCTCGTCGGAATCAAGAAACACTTCCGCCGGAAACACAGCAACCACAAACAATGGGTCTGCAACCGCTGCTCCAAGGCCTACGCCGTTCAGTCCGATTACAAGGCTCATCTCAAGACCTGTGGCACTCGCGGCCATTCCTGTGATTGTGGCCGAGTCTTCTCCAGGGTGGAGAGCTTCATCGAACACCAAGATGCGTGCAATATGGGGCGACTCCTGCCGGAGTCGCAGCCGCAGCAACCGGCGTGTCTGTCTCGAACTGCGTCGAGCCCGAGCCCGTCGAGCGAGACCAATTTCAGCGCCGGTCCGGCCTGGCCTCCACCCGGTCTGGTGATACCAAAGCCAACAACGGCGGAACCCACATTCTTCTATAATAACCCTATCGCCGATCAAACCTCATCCAAGACGTTGAATCAAAACAGCAACAAGAAGCTCTACCCGAACTTGGAACTTCAGCTCTCAACCGCCACGCACAACGTCGTCGCAATAGACGACACCCATTCTACCCAGTTACAGCTCTCAATTGGGTCGTCAGACATGAGCGACAAAAACGAATGGAATAGGAATTCATCACCAAAGGAGAGCAGTAACAGCAGCGATAAGCCGGCGGCGGCGTTGATGGTGGAGAAAGCGTACGCGGAGGAGGCGAGGAAAGAAGCCAAGAGGCAGATGGAGGCGGCGGAGCAAGAGTTCGCAAACGCAAGGAGAATAAGACAGCAAGCTCAAGCCGAACTGGATAAAGCATATGCTTTGAAAGAACAAGCCATTCAACAGATCAATTCCACCATGCTTCAGATCACATGTCAAGCTTGTAAGAAAAAGTTTCAACATCAAGATCAAAAATTAATAACGGAAGGTGGCCAAGTATTAGACAAAAACAACATTAACAATAACGGGAAAGAAATTAAAACCACTAACTGCTGA 1260 0.5214 MSSVPNSEQFSTADNGTNTSTTANKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVARKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCNRCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLLPESQPQQPACLSRTASSPSPSSETNFSAGPAWPPPGLVIPKPTTAEPTFFYNNPIADQTSSKTLNQNSNKKLYPNLELQLSTATHNVVAIDDTHSTQLQLSIGSSDMSDKNEWNRNSSPKESSNSSDKPAAALMVEKAYAEEARKEAKRQMEAAEQEFANARRIRQQAQAELDKAYALKEQAIQQINSTMLQITCQACKKKFQHQDQKLITEGGQVLDKNNINNNGKEIKTTNC 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1890 419 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Lele05g1890 419 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 384 IPR031140 -
Lele05g1890 419 MobiDBLite consensus disorder prediction 1 27 - -
Lele05g1890 419 SMART c2h2final6 131 158 IPR013087 -
Lele05g1890 419 SMART c2h2final6 54 76 IPR013087 -
Lele05g1890 419 SMART c2h2final6 95 125 IPR013087 -
Lele05g1890 419 Gene3D Classic Zinc Finger 32 95 - -
Lele05g1890 419 MobiDBLite consensus disorder prediction 286 314 - -
Lele05g1890 419 SUPERFAMILY beta-beta-alpha zinc fingers 53 151 IPR036236 -
Lele05g1890 419 MobiDBLite consensus disorder prediction 190 213 - -
Lele05g1890 419 Coils Coil 315 370 - -
Lele05g1890 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Lele05g1890 419 FunFam protein indeterminate-domain 12-like 33 101 - -
Lele05g1890 419 Gene3D Classic Zinc Finger 116 193 - -
Lele05g1890 419 MobiDBLite consensus disorder prediction 190 221 - -
Lele05g1890 419 MobiDBLite consensus disorder prediction 1 43 - -
Lele05g1890 419 Pfam Zinc-finger of C2H2 type 54 72 - -
Lele05g1890 419 MobiDBLite consensus disorder prediction 286 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1890 Lele-ChrLele05 13040514 13042680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1890 14 388 C2H2 Transcription Factor Family AT2G01940 58.040 5.80e-146 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g1890 zf-met 0.023 CL0361