Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1889 ATGGAAGGAGGAGGAGCAGATCACAGTAACTCATCCAATTCTATCTACAGAGAGTGTCTGCGAAACCATGCAGCCAGCCTCGGCAGCTACGCCACCGACGGATGCGGCGAGTTCACCCTCGACGACTCATCTCCAGGAGGGTGTCTACAATGCGCCGCCTGTGGCTGTCACCGGAACTTCCACCGTAAGGTGACGTACCCGCCGCCTCCGAGAGGGTTCAGCCGGCCGGAACTGATGACGGGGGAGCTGATGGAGTACAGCGGTGGTGAGGGGACGCCACCGCACAGCGGGATGATGGAGGCTGGAGAGAGGACGACGTCGGCAGGGACTGGGAAGAAGAGGTTCCGGACAAAGTTCACGGCGGAGCAGAAGGAGAAGATGATGGGATTTGCAGAGAAGCTCGGGTGGAAGTTGCAGAGGAAGGATCTAGACGATGAGATAGAGAGATTCTGCAGAGGATTGGGAGTGAGCAGACAAGTGTTCAAGGTTTGGATGCATAACCATAAGAATTCTTCTTCTTCATCATCTGCTTCTACTGGCAATGCCTCATCTCTTACCCAGTAA 564 0.555 MEGGGADHSNSSNSIYRECLRNHAASLGSYATDGCGEFTLDDSSPGGCLQCAACGCHRNFHRKVTYPPPPRGFSRPELMTGELMEYSGGEGTPPHSGMMEAGERTTSAGTGKKRFRTKFTAEQKEKMMGFAEKLGWKLQRKDLDDEIERFCRGLGVSRQVFKVWMHNHKNSSSSSSASTGNASSLTQ 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1889 187 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 16 63 IPR006456 -
Lele05g1889 187 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 112 170 IPR006455 -
Lele05g1889 187 MobiDBLite consensus disorder prediction 91 111 - -
Lele05g1889 187 MobiDBLite consensus disorder prediction 167 187 - -
Lele05g1889 187 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 171 - -
Lele05g1889 187 FunFam Zinc-finger homeodomain protein 2 99 174 - -
Lele05g1889 187 Pfam ZF-HD protein dimerisation region 15 65 IPR006456 -
Lele05g1889 187 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 16 64 IPR006456 -
Lele05g1889 187 SUPERFAMILY Homeodomain-like 105 170 IPR009057 -
Lele05g1889 187 Gene3D - 97 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1889 Lele-ChrLele05 13009661 13010224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1889 16 171 ZF-HD Transcription Factor Family AT4G24660 47.727 1.34e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele05g1889 ZF-HD_dimer 3.3e-23 No_clan