Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1876 ATGGTTCTAGGATGGCGAAGAAGAAAGAACGGCCGCCGCAACGACAAACTTCATCTCGAGCTCGTCGTTCCCAACCATTTCCGGTGTCCGATTTCCCTCGATTTGATGAAAGATCCTGTCACATTGTCCACCGGAATCACCTACGATCGTGAAAACATCGAAAGGTGGTTCCTTGACGGAAATTTCACTTGCCCTGTTACCAATCAGGTTCTTCGGAGCTTCGATCTCATTCCTAATCACACTCTTCGCATCATGATTCAGGACTGGTGTGTAGAAAATCGACAATATGGGGTCGAGAGAATCCCCACCCCGAGAATTCCCATTTCACCAATCGAAGTTGCAGAGGTTCTTCTTCTTTTGAAATCTTCGGCGAGGCGTTTGGATCAGTACGGTTGTCTCGAACTGGTTAAGAAAATGGAGAAATGGGGTGAAGAAAGCGAGAGGAACAAGAAGTGCATAGTTGAAAATGGAGCTACCGCTGCTCTGGCCTCTGCTTTTGATTCTTTCGCGAATGATTCGATTGAGAAGAATCTTAGTGTTTTGGAAGAGATTTTGTCTGCTTTGAATTGGATGTTCCCACTTCAAATGGAAGCCCAGAATTCGTTGGGCTCACAAGCTTCGTTACGTTGCATGGTGTGGTTTCTGAAACATCAAGATATTGCAGGGAAAGACAAGTCCATTGTTGCTCTCAGGGAGCTTTTATCTTTCGGAAGCCATCAGCATCTGAATGTTCTGTCAGAAATTGAAGGAGTCAACGAACAATTGGTGGAATTAATCACGAAAAGACTGAGTCCAACCACTGCAAAAGCTTCGTTAGCTGTAGTTTTCTATTTGGTTTCATCATCTTCATCTTCTTCAAGTGACAAGATGAAACAGAGATTCATCGAACTGGGGTTGGTCTCTTGTTTACTGGAGATTCTCCTGGACTCAGAAAGAAGCCTCTGTGAGAAGGCTTTGGCAATTTTGGATTCACTCTGCTCTTGTAAAGAAGGCAGAGAAAAAGCCTACAGTAACGCGTTGACGATCCCTGTGTTGGTGAAGAAGATACTGAGAGTTTCAGCCATGGCTACAGATTGCTCTGTTTCTGCAATATGGAAGCTGTGCAAGAATGTTCAAGAGAAAGAAGGCGAAGACGAAGAAGAAGAAGAAGGAAGCGTTCTGAAAGAGGCACTGCAAGTTGGTGCGTTTCAGAAGCTGTTGGTATTGTTGCAGATTGGATGTGGGGATGAAACGAAGGTGAAAGCAACAGAGCTTCTTAAGCTTCTGAATCAATATAGGTCAGGCGAAGAGTGTGTAGACTCAGATTTCAAGAACCTCAAGAGATCACATTAA 1332 0.4429 MVLGWRRRKNGRRNDKLHLELVVPNHFRCPISLDLMKDPVTLSTGITYDRENIERWFLDGNFTCPVTNQVLRSFDLIPNHTLRIMIQDWCVENRQYGVERIPTPRIPISPIEVAEVLLLLKSSARRLDQYGCLELVKKMEKWGEESERNKKCIVENGATAALASAFDSFANDSIEKNLSVLEEILSALNWMFPLQMEAQNSLGSQASLRCMVWFLKHQDIAGKDKSIVALRELLSFGSHQHLNVLSEIEGVNEQLVELITKRLSPTTAKASLAVVFYLVSSSSSSSSDKMKQRFIELGLVSCLLEILLDSERSLCEKALAILDSLCSCKEGREKAYSNALTIPVLVKKILRVSAMATDCSVSAIWKLCKNVQEKEGEDEEEEEGSVLKEALQVGAFQKLLVLLQIGCGDETKVKATELLKLLNQYRSGEECVDSDFKNLKRSH 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1876 443 Gene3D - 121 438 IPR011989 -
Lele05g1876 443 FunFam RING-type E3 ubiquitin transferase 23 94 - -
Lele05g1876 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 100 IPR013083 -
Lele05g1876 443 CDD RING-Ubox_PUB 27 69 IPR045210 -
Lele05g1876 443 PANTHER WDSAM1 PROTEIN 20 433 IPR045185 GO:0061630
Lele05g1876 443 SUPERFAMILY RING/U-box 22 99 - -
Lele05g1876 443 Pfam U-box domain 23 94 IPR003613 GO:0004842|GO:0016567
Lele05g1876 443 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
Lele05g1876 443 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
Lele05g1876 443 SUPERFAMILY ARM repeat 160 379 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1876 Lele-ChrLele05 12879092 12880423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1876 5 441 U-box Gene Family AT5G37490 43.973 3.05e-118 350