Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1870 ATGAGCTTGCAAGTCAGACAAGAAAGAAGGGATCGATCCAGGGTTCCTGCCCAAGGTTCTCGTCAGGAATGGATTCCAAGAGCATCTGCTGCCGCTGTGAATTCCCCACCATCAAATTATCCAATGGATCAAAATGGTAATGCTGGTTTTTCAAATAATGATGTTACTCCACCAGCAAATCGGCATAGAAGCAGTCATGGGTCAAGGGATTACATAAGTCGGCCTATGAATCATAGAAGGGAAAGGGAAAAGGGAAGGAATGAGAATCAGGTGGTGCAACATCCCAGGGACTCTAATTTGCCTCAATTGTTGCAAGAGATCCTGGATAAGCTTATGAAAGGTACTGTAGAATGCATGATTTGCTATGACATGGTCCGTAGATCTGCACCCATCTGGTCTTGCTCAAGCTGCTACTCAATCTTTCACCTGAATTGTATTAAGAAGTGGGCTCGAGCACCTACTTCTGTTGATGTGTCTGCAGAAAAGAATCAAGGATTTAATTGGCGCTGTCCTGGGTGTCAATCTGTACAGCTGACGTCATCAAGGGAGATTAGGTATGTATGCTTTTGTGGAAAGAGGCCAGACCCACCATCTGATCTATATCTCACTCCACATTCTTGTGGAGAACCATGTGGGAAGCCTCTTGAGATAGAGATGTTGGTTAATGGAGGGAGAGGGAGCAAGGAAGATATCTGCCCTCATGTTTGTGTTTTGCAATGCCATCCAGGTCCATGCCCTCCATGTAAAGCATTTGCACCACCTTGTTTGTGCCCTTGTGGGAAGAAAACTATTACCACAAGGTGCTCTGCTCGGTCCTCTGTTCTTACTTGTGGTCAACATTGTGATAAACTTCTTGAGTGTGGGCGTCATAGGTGTGAACGCATTTGCCATGTGGGTCCGTGTGACCCTTGTCAGGTTCTAATCACTGCCTCTTGTTTCTGCAACAAGAAGGATGAGGTTATTCTTTGTGGGGACATGGCTGTGAAGGGTGAAATTGAAGTCGAAGGTGGTGTATTTTCTTGTGGTTCCAATTGTGGGAAGAAGCTTAGCTGTGGTAATCATGTTTGCAATGAGAAATGTCATCAAGGCAACTGTGGGGAGTGTGAATTCTTACCAAGCAAGGTTAAGGCATGCTGTTGTGGGAAAACAAAATTGGAGGAGGAACGACGGAGTTGTCTAGATCCAATACCAACCTGTTCACAAGTATGTGGCAAGCCTCTTCCTTGTGGGTTGCATCATTGTAGAGAGGCATGTCATCCTGGGGATTGTTCACCATGTTTAGTTCTAGTCTCCCAAAAGTGTCGGTGTGGTTCAACTTCTCGAACTGTGGAGTGCTATAAGGCAATGAAGGAGAACGAGTCATTTACTTGTGAAAGATCTTGTGGGCGGAAAAAAAACTGTGGAAGGCATCGATGCAGTGAAAGGTGTTGTCCACTTTCTAATCCAAATAATCTTCTAAATGGGGAATGGGATCCTCACTTTTGTACCATGCCATGTGGAAAAAAGCTAAGGTGCGGCCAACATGCATGTGAATCACTATGTCACAGTGGCCATTGTCCACCTTGTCTCGAAACTATCTTCACTGATTTGACATGTGCTTGTGGTAGGACTTCAATCCCTCCTCCATTGCCTTGTGGCACACCCCCTCCCTCATGTCAACTTCCATGCTCAGTTCCTCAACCTTGTGGCCATTCAGCCGCCCACAGCTGCCACTTTGGTGATTGCCCCTCTTGTTCAGTGCCTGTGGCAAAAGAATGTATTGGTGGGCATGTGGTTCTTAGGAATATACCTTGTGGATCAAAGGATATTAGATGTAATAAACTCTGTGGGAAGACCAGACAGTGTGGTTTACATGCTTGTGGCAGAACATGTCACCCTCCACCTTGTGATCCATCTGGTTGTGACCAAGGTCTCCGAGCTTCTTGTGGTCAAACATGTGGTGCTCCAAGGAGAGACTGTAGGCATACATGTACAGCTCCATGTCACCCCTCGGCACCATGCCCTGATATAAGATGTGAGTTCTCTGTTACAATTACTTGTTCTTGTGGCCGTGTAACAGCAAATGTTCCTTGTGGTGCTGGTGGTGGTAATTATAATGTGGATTCCATACATGAAGCTTTCATAATTCAAAAGTTGCCATTGCCACTTCAACCAGTGGAAAACAGCAAATTGATTCCCCTTGGACAAAGAAAGCTGACATGTGATGATGAGTGTTCTAAGTTGGAGCGTAAAAAGGTTCTTGCCGATGCTTTTGATGTCACCACTCCAAACTTGGATTCTCTTCATTTTGGTGAGAACTCTACTACTACTGAATTGCTTTCAGACATGCTCAGGCGTGATCCTAAGTGGGTTTTGTCTGTGGAGGAGAGATGCAAATTTTTAGTTCTTGGCAAGAGCAGAGGAGTAACACATGGTTTAAAAATCCATGTTTTCTGTCCAATGCTGAAAGATAAGAGAGATGCAGTGACTGTTATTGCTGAGAGATGGAAGTTGGCTGTGAATTCTGCTGGTTGGGAGCCAAAGCGTTTTGTCGTAGTTCATGTTACTCAGAGGTCAAAGGCGCCTCCCCGGGTGCTTGGAGCTAAGGGTACCACAACAATAAATGCACCCTTGCCTCCACAATTTGATCCCTTAGTAGACATGGATCCCCGTCTTGTCGTCTCCTTCCCAGACTTACCAAGAGAAGCCGATGTAAGTGCTCTAGTATTGAGGTTTGGCGGTGAATGTGAGCTTGTTTGGTTGAATGATAAAAATGCATTGGCTGTTTTCCATGATCCTAGCCGATCTGCAACTGCGATGAGGAGGTTGGATTATGGAACAGCTTACCATGGGGCTGTGGTAGCTGTACCAAATACCGGGGCAGCAACAACATTGACCACTACTAATGCATGGGGAGGAGCTGGGACGGTGAAAGAAGGAGGAGCGCTGGCAGCATTGAAGAGGAATTCATGGAAAAAGGCTGTGGTTCAAGAGCCTGGTTGGAGAGAAGATTCTTGGGGCGATGAAGAGTGGACTACTGGTTCTGCTAATCTCCAGCTTTCTGCCTGGACGAGAGAAACACCTAAAGTCCCAATCACTGCTTCATCGAACCGGTGGAGTGTCTTAGACCAAGAACCATCTTCAAGTTCATCTGCTGCGATCATTAGAACTGAAGTTTCTCGGAAACACTTGACAAGTTCATCTTCAGTCCCAAAGCTGGAATCTGAATCCGGTGATCCTTTTCCAGGACAGCGTCCAGGAAACGCTAATGCAACAGAAGTTTCTGAAGTAGTAGATGATTGGGAGAAAGCTTATGAATGA 3300 0.4579 MSLQVRQERRDRSRVPAQGSRQEWIPRASAAAVNSPPSNYPMDQNGNAGFSNNDVTPPANRHRSSHGSRDYISRPMNHRREREKGRNENQVVQHPRDSNLPQLLQEILDKLMKGTVECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSVDVSAEKNQGFNWRCPGCQSVQLTSSREIRYVCFCGKRPDPPSDLYLTPHSCGEPCGKPLEIEMLVNGGRGSKEDICPHVCVLQCHPGPCPPCKAFAPPCLCPCGKKTITTRCSARSSVLTCGQHCDKLLECGRHRCERICHVGPCDPCQVLITASCFCNKKDEVILCGDMAVKGEIEVEGGVFSCGSNCGKKLSCGNHVCNEKCHQGNCGECEFLPSKVKACCCGKTKLEEERRSCLDPIPTCSQVCGKPLPCGLHHCREACHPGDCSPCLVLVSQKCRCGSTSRTVECYKAMKENESFTCERSCGRKKNCGRHRCSERCCPLSNPNNLLNGEWDPHFCTMPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHSAAHSCHFGDCPSCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHPPPCDPSGCDQGLRASCGQTCGAPRRDCRHTCTAPCHPSAPCPDIRCEFSVTITCSCGRVTANVPCGAGGGNYNVDSIHEAFIIQKLPLPLQPVENSKLIPLGQRKLTCDDECSKLERKKVLADAFDVTTPNLDSLHFGENSTTTELLSDMLRRDPKWVLSVEERCKFLVLGKSRGVTHGLKIHVFCPMLKDKRDAVTVIAERWKLAVNSAGWEPKRFVVVHVTQRSKAPPRVLGAKGTTTINAPLPPQFDPLVDMDPRLVVSFPDLPREADVSALVLRFGGECELVWLNDKNALAVFHDPSRSATAMRRLDYGTAYHGAVVAVPNTGAATTLTTTNAWGGAGTVKEGGALAALKRNSWKKAVVQEPGWREDSWGDEEWTTGSANLQLSAWTRETPKVPITASSNRWSVLDQEPSSSSSAAIIRTEVSRKHLTSSSSVPKLESESGDPFPGQRPGNANATEVSEVVDDWEKAYE 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1870 1099 CDD RING-CH-C4HC3_NFX1 117 174 - -
Lele05g1870 1099 MobiDBLite consensus disorder prediction 63 91 - -
Lele05g1870 1099 CDD NF-X1-zinc-finger 552 600 - -
Lele05g1870 1099 CDD NF-X1-zinc-finger 399 447 - -
Lele05g1870 1099 SMART znfxneu3 505 524 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 SMART znfxneu3 653 674 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 SMART znfxneu3 467 497 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 SMART znfxneu3 562 580 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 SMART znfxneu3 287 306 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 SMART znfxneu3 351 370 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 SMART znfxneu3 409 428 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 SMART znfxneu3 615 636 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 SMART znfxneu3 232 250 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 CDD NF-X1-zinc-finger 207 270 - -
Lele05g1870 1099 CDD NF-X1-zinc-finger 495 538 - -
Lele05g1870 1099 ProSiteProfiles Zinc finger RING-type profile. 118 174 IPR001841 -
Lele05g1870 1099 SUPERFAMILY RING/U-box 117 177 - -
Lele05g1870 1099 MobiDBLite consensus disorder prediction 1 96 - -
Lele05g1870 1099 Pfam NF-X1 type zinc finger 234 249 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 Pfam NF-X1 type zinc finger 646 671 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 Pfam NF-X1 type zinc finger 467 478 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 Pfam NF-X1 type zinc finger 409 426 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 Pfam NF-X1 type zinc finger 615 631 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 Pfam NF-X1 type zinc finger 505 522 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 Pfam NF-X1 type zinc finger 351 368 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 Pfam NF-X1 type zinc finger 562 579 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 Pfam NF-X1 type zinc finger 287 305 IPR000967 GO:0005634|GO:0008270
Lele05g1870 1099 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 45 1002 IPR034078 GO:0003700
Lele05g1870 1099 CDD NF-X1-zinc-finger 642 693 - -
Lele05g1870 1099 ProSiteProfiles Zinc finger PHD-type profile. 115 176 IPR019787 -
Lele05g1870 1099 MobiDBLite consensus disorder prediction 1 17 - -
Lele05g1870 1099 MobiDBLite consensus disorder prediction 32 62 - -
Lele05g1870 1099 CDD NF-X1-zinc-finger 605 662 - -
Lele05g1870 1099 CDD NF-X1-zinc-finger 341 386 - -
Lele05g1870 1099 MobiDBLite consensus disorder prediction 1053 1099 - -
Lele05g1870 1099 MobiDBLite consensus disorder prediction 1053 1067 - -
Lele05g1870 1099 CDD NF-X1-zinc-finger 277 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1870 Lele-ChrLele05 12822746 12826045 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Lele05g1870 zf-NF-X1 1e+02 No_clan