Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1829 ATGGTTGTTTCCATGAGAAGGCCTTGCTCTCAGAAACGACCATGGTCCAAGGAAGAAGACCAGAAACTCATTGATTACATCCAAAAACATGGTGAAGGTTGCTGGCCTTCTCTTCCTCAGGCTGCAGGGTTGCATCGCTGCGGAAAAAGCTGTAGGTTGAGATGGTTAAATTATCTGAAGCCAGACATTAAACGAGGAGACATCGGAGAAGACGAAGAGGACTTGATCATCAGGCTTCATGCTCTTCTTGGCAACAGGTGGGCACTGATAGCGGGAAGATTACCAGGAAGAACTGATAACGAGGTGAAGAATTACTGGAACTCACACATAAGAAAGAAGCTTATTCAGATGGGTCATCATAATGTTGGTGATCGCTTTAAAGACTTCACGCTTATTAATGGAACTGCAAAATCATCCATCATTAACGAACCTAATCACAAGAATCCGGTCAAGTTGAATGCTGCTACTGATAATAATATTATCGACGAAGACCACGACGACGACGACCATCAGGCATTTGAGTCAACAAGAAGCATGCCCAAATTCAACCTCAACGATGCTTTTCCAGAGCTGAATCTTGATCTCACACTCACTACTTATCACTCTAATGATGTTCATTAA 621 0.43 MVVSMRRPCSQKRPWSKEEDQKLIDYIQKHGEGCWPSLPQAAGLHRCGKSCRLRWLNYLKPDIKRGDIGEDEEDLIIRLHALLGNRWALIAGRLPGRTDNEVKNYWNSHIRKKLIQMGHHNVGDRFKDFTLINGTAKSSIINEPNHKNPVKLNAATDNNIIDEDHDDDDHQAFESTRSMPKFNLNDAFPELNLDLTLTTYHSNDVH 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1829 206 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Lele05g1829 206 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 156 - -
Lele05g1829 206 SMART sant 64 112 IPR001005 -
Lele05g1829 206 SMART sant 11 61 IPR001005 -
Lele05g1829 206 Gene3D - 69 128 - -
Lele05g1829 206 CDD SANT 14 59 IPR001005 -
Lele05g1829 206 CDD SANT 70 110 IPR001005 -
Lele05g1829 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Lele05g1829 206 SUPERFAMILY Homeodomain-like 11 106 IPR009057 -
Lele05g1829 206 Pfam Myb-like DNA-binding domain 69 109 IPR001005 -
Lele05g1829 206 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Lele05g1829 206 Gene3D - 12 64 - -
Lele05g1829 206 FunFam MYB-related transcription factor 11 64 - -
Lele05g1829 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 59 IPR017930 -
Lele05g1829 206 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1829 Lele-ChrLele05 12354011 12357916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1829 6 198 MYB Transcription Factor Family AT4G38620 46.829 2.07e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele05g1829 Myb_DNA-binding 1.1e-14 CL0123