Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1800 ATGCCTGTTGTTTCAGATGCTTCTGCAACTGCAGCACACATAAAATGTAGAAGACCAAGAAGCAATTTTGGTCATCTCATTCAAGAAGCAGATCCGAACCCGGCAATCCCTTCAATAATCGAGTTCACTCGCTGCAAATCAACCATTTCGTCTCTTCTTCTCTCTACTTTCTCTAATAACAACGCGTCGAATGAGAGTATACAGCGCAACGGCATCAACATTGGCGGAAGTGGCAGTGGCCGTAGCAAGAAGAAGAACAATTTCTCGGCGGCTGCAACCTTCAGAGGACTCGGATGCACCGCGGGTGCGTCCCAGCAGGTGTCGGTTCCGGCGGTGATTAGGTCGTCGGCGGACTGGCAAGGGAAGAAGGCTAGAAAGAAGAAGCACAAAAGAAATAGCACCAAGACCCGTCCTGGGGTTCTTGATGGTTCTGGTTCTGCTAATTGCGTTGATTTTCAAGACGTCTGGTGTGGTCCTGGAATTGGATTTTCAGCCGATGCTGCTGCGTCTGTTGATTGCGTCGTGGCGAGGAAGAATGTTTCTGCGAGAGGAAAGATTGATGTGGAGAGGATGATTCACAGGGAGCGTGTTTCTTATCTTGGAAGACGAACAGTTAACCCAGAAACCATCTCGTTTCTGGATAATGATCCTGATATCTTCCCTACACGCCCTCCTGCTCCTGATTCCTATGCAACTTCAAGATACTATCGTCATGTTCAACATCCTTCATCTGAAGGTTTTGCTGAGATAATGATGCTTCAAGGAGGTCTGCTAATGGGAGGGATATTAGATTCACATGACCGATTTAGAGACTGGAGACTTGATGTTGATAACATGTCCTATGAGCAACTGCTTGAGCTTGAAGAGAAGATAGGTTATGTGAACACTGGTCTTAAAGAAGACGAGATAGGATGCCACATAAGGAAAATCCCATATCCATTTTTGAGTGAATCATTGAAGCACCATATTAACAAAAACTGCAGCATTTGTCAGGAGGAATATGAAGGAGATGATGAGATGGGGAAGCTTAACTGTGAACACAGCTATCACTTTGAATGCATCAGACAATGGCTTGCACAGAAAAACTTCTGCCCAGTTTGTAAGCAAGAAGTTGTGGTTCGTCACTAG 1128 0.4557 MPVVSDASATAAHIKCRRPRSNFGHLIQEADPNPAIPSIIEFTRCKSTISSLLLSTFSNNNASNESIQRNGINIGGSGSGRSKKKNNFSAAATFRGLGCTAGASQQVSVPAVIRSSADWQGKKARKKKHKRNSTKTRPGVLDGSGSANCVDFQDVWCGPGIGFSADAAASVDCVVARKNVSARGKIDVERMIHRERVSYLGRRTVNPETISFLDNDPDIFPTRPPAPDSYATSRYYRHVQHPSSEGFAEIMMLQGGLLMGGILDSHDRFRDWRLDVDNMSYEQLLELEEKIGYVNTGLKEDEIGCHIRKIPYPFLSESLKHHINKNCSICQEEYEGDDEMGKLNCEHSYHFECIRQWLAQKNFCPVCKQEVVVRH 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1800 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 63 371 IPR045191 GO:0061630
Lele05g1800 375 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
Lele05g1800 375 MobiDBLite consensus disorder prediction 118 140 - -
Lele05g1800 375 SUPERFAMILY RING/U-box 326 373 - -
Lele05g1800 375 SMART ring_2 327 367 IPR001841 -
Lele05g1800 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 373 IPR013083 -
Lele05g1800 375 FunFam E3 ubiquitin-protein ligase rnf12-A 294 373 - -
Lele05g1800 375 Pfam Ring finger domain 326 368 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1800 Lele-ChrLele05 12000324 12003733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1800 82 282 C3H Transcription Factor Family AT1G73760 44.843 1.76e-49 166