Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1784 ATGGCGACGCCGTTGGCTGGACTACAGCACTTGGACGGAGGTGGAAGAGTGGCCGTGCTCTCCAATTCTGTGAACAAGGCCGATTCTTCCTCCTCCACATCCAATGGTGGCTTGAAGTGCTCCGAATTGGAGTCGCCTATTCTAATTTTCTTATTCTTCCACAAAGCGATTCGGAATGAGCTTGATGCCCTCCACCGATCAGCAATGGCATTTGCCACCGGCTATCGCTCTGATATTCAGCCGCTGTGCGAACGCTATCATTTCCTGAGATCAATTTACAGCCACCATTCCAATGCCGAAGATGAGGTGATTTTTCCAGCTCTTGATATACGTGTGAAAAATGTAGCACGGACATATTCCCTTGAACACAAGGGTGAAAGTAATCTTTTTGATCATCTATTTGAACTGTTAAATTCTACCACCCATAATAATGAAAGTTTCCTGAAGGAGTTAGCATTCTGCACGGGAGCCCTGCAGACATCAGTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTGTTTCCTCTGCTCATTGAAAAGTTCTCTCTTGAGGAACAGGCATCTTTAGTTTGGCAGTTTCTCTGCAGTATTCCTGTGAATATGATGGCAGTATTTCTTCCATGGCTTTCAGCATCTATATCACCTGATGAATCTGAGGATCTGCGGAAGTGCTTGGGCAAAATAGTGCCACAGGAAAAGCTTCTTCAAAAGGTTATTTTTACTTGGATGGAAGGGAGAAGTGGTGCTCTTGCAGTTGAAAGTTGTGTTGATCATTCTCAGTTTCAAGGTTCTTGTTGCCCATTAACCCACCAGGTTGAGAAATTAAATTCTGCTTGTGAGTTCACAACAACTGGGAAAAGGAAACATTCTGAATCTGGTCTAGATGTTTCTGATATTAATGGAACACATCCTATAGATGAAATATTACTGTGGCATAATGCAATAAAAAAGGAGTTAAGTGAGATAGTGGGGGAGACCAGGAAGATACAGCTCTGTGCAGATTTTACTAATCTATCAGCTTTTAATGAACGATTGCAATTTATCTCTGAAGTTTGCACATTTCACAGTATTGCTGAGGACAAGGTTATATTTCCAGCTGTAGATGGTGAATTTTCTTTCTTCCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGAGTTTGATTGAAGCTATTCAGAATGAAGAAGCAACATGTAATTCAGAAGTTGAATTTTATTCCAAGTTGTGCTCACATGCTGATCAGATAATGGAAACTATACAAAGACATTTCCATAATGAAGAAGTTCAAGTTCTTCCTCTTGCTCGGAAGCACTTTAGCTTTGGAAGGCAATGTGAACTTCTATATCAAAGCTTGTGCATGATGCCTTTGAAATTGATTGAACGCGTCCTGCCATGGCTGGTAGGATCATTAACCGAAGATCAAGTGAAGATGATTTTAAGAAATATGCAATTGGCAGCTCCAGCAACAGATTCTGCTCTAGTCACACTCTTCTGTGGTTGGGCTTGCAAGGCTCGTAATGAGGGCTTGTGTTTGTCTTCAAGTGCATCGGGTTGCTGTCCTGCTCAAAGACTTACTGATATTGAGGAAAATTTTGTCCAGTCATCCTGTCCTTGTGGCACTTCAGCATCTTCTGTTAGAGATTACTCATTGCTAGTTGAGCTAGATGAGAACAAAAGACCAGTTAAGCGGAGCATATTGGAGTTATGCAAGAATAGAGATGTCTCTGAAACTTCAGAGTCTGAAAGTATTGAGAAACAATGTTGTGGTGCAAGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAGCAGTAATAATTTGGGGCAAAGCTCCCTTTCTACTGTCAAGTCCTTACGCTCCTTGTCTTTCAGCTCTTCTGCTCCATCTATAAATTCCAGTCTTTTCGTATGGGAAACAGATAATAACTTGTGTGACAACTCTGCAGAAAGGCCTATTGATACTATATTTAAATTTCACAAAGCTATACAGAAAGATTTGGAGTATTTAGATATTGAATCTGGAAAGCTTGGTCATGGTGATGAGACAATTCTTCGGCAGTTTACTGGAAGATTTCGTCTTTTGTGGGGTCTATATAGAGCTCACAGTAATGCTGAGGATGATATAGTATTTCCAGCACTGGAATCCAAAGAATCCCTTCATAATGTGAGCCATTCATACATGCTGGACCATAAGCAGGAAGAAAAATTATTTGAAGATATTTCCCATGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGACTTTCAGATGACCAATGAAAGTAATTCTGAAACTTCTGGTGTTAGTTTTAGGGATAATAACAGAAAGTACAATGAGCTAGCAACTAAACTTCAAGGGATGTGCAAATCCATACGTGTGACACTGGATCAGCATATTTTTAGGGAAGAGCTTGAGCTCTGGCCATTGTTTGGGAGACATTTTACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGGACTACAGGTGCAGAAGTTCTACAATCAATGCTACCATGGGTAACTTCTGCACTTACTGAGGATGAACAGAACAAATTGATGGATACATGGAAGCAGGCAACAAAAAATACTATGTTCAAAGAATGGCTTAATGACTGCTGGAAAGAAAATCCAGCTATATTGCAGAAAGAAACACCAGAGCAAACTTCTCAAAAAGGTACTGAACATCAGGAAAGCATGGACCTGAATGATCAGATGTTTAAGCCAGGATGGAAAGACATATTCCGGATGAATCAGAATGAGCTTGAGTCAGAGATCCGAAAGGTTTATCAAGACTCAACTCTTGATCCAAGAAGAAAAGCATATCTCGTGCAGAATCTAATGACTAGTCGATGGATAGCTGCACAGCAGAAGTTACCTAAAGCTACAGATGGGGATTGTACAGATGGAGAAAGAATTGAAGGACGCTCAGCATCATTTCAGGACCAGGAGAAACAGATATTCGGGTGTGAACACTATAAAAGAAACTGCAAACTTAGAGCTGCATGCTGTGGCAAGTTGTTTACATGTAGATTTTGCCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACTTCAGAAATGATGTGTATGTGTTGCTTGAACATACAGCCAGTTGGGCCGATATGCATGACACCTTCATGTAATGGATTTTCAATGGCAAAATACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAATGTATATCACTGCCCATTTTGCAATTTGTGCCGTGTGGGGAGAGGGCTTGGGATCGATTATTTTCATTGTATGAAATGCAACTGCTGCTTGGGGATAAAATCGGCATCTCACAAGTGCCTGGAGAAAGGCTTAGAAATGAATTGCCCAATTTGCTGTGACTTCTTATTCACATCAAGTGCTACAGTCAGAGCTCTACCTTGTGGACATTATATGCATTCAGCTTGCTTTCAGGCGTACACTTGTAGTCACTACACATGTCCAATCTGCAGCAAATCATTGGGTGATATGGCGGTATACTTTGGCATGCTTGATGCTTTATTGGCTGCTGAGGAGCTCCCAGAAGAGTACAGGGACCGTTATCAGGACATACTTTGCAATGACTGTGAACGAAAGGGGTGTTCTCCCTTCCACTGGTTGTATCACAAATGTGAATTTTGTGGCTCATACAACACACGTGTGATCAAGTCGGAGCCATCAAATTCGCGCTGCTCTTAG 3711 0.4126 MATPLAGLQHLDGGGRVAVLSNSVNKADSSSSTSNGGLKCSELESPILIFLFFHKAIRNELDALHRSAMAFATGYRSDIQPLCERYHFLRSIYSHHSNAEDEVIFPALDIRVKNVARTYSLEHKGESNLFDHLFELLNSTTHNNESFLKELAFCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAVFLPWLSASISPDESEDLRKCLGKIVPQEKLLQKVIFTWMEGRSGALAVESCVDHSQFQGSCCPLTHQVEKLNSACEFTTTGKRKHSESGLDVSDINGTHPIDEILLWHNAIKKELSEIVGETRKIQLCADFTNLSAFNERLQFISEVCTFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRSLIEAIQNEEATCNSEVEFYSKLCSHADQIMETIQRHFHNEEVQVLPLARKHFSFGRQCELLYQSLCMMPLKLIERVLPWLVGSLTEDQVKMILRNMQLAAPATDSALVTLFCGWACKARNEGLCLSSSASGCCPAQRLTDIEENFVQSSCPCGTSASSVRDYSLLVELDENKRPVKRSILELCKNRDVSETSESESIEKQCCGARSCCVPGLGVSSNNLGQSSLSTVKSLRSLSFSSSAPSINSSLFVWETDNNLCDNSAERPIDTIFKFHKAIQKDLEYLDIESGKLGHGDETILRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKESLHNVSHSYMLDHKQEEKLFEDISHVLSELSVLHEDFQMTNESNSETSGVSFRDNNRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTEDEQNKLMDTWKQATKNTMFKEWLNDCWKENPAILQKETPEQTSQKGTEHQESMDLNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKATDGDCTDGERIEGRSASFQDQEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMCCLNIQPVGPICMTPSCNGFSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCNDCERKGCSPFHWLYHKCEFCGSYNTRVIKSEPSNSRCS 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1784 1236 Pfam Ring finger domain 1119 1161 IPR001841 -
Lele05g1784 1236 Gene3D nmb1532 protein domain like 646 895 - -
Lele05g1784 1236 FunFam Zinc finger protein BRUTUS 647 873 - -
Lele05g1784 1236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1116 1164 IPR013083 -
Lele05g1784 1236 SUPERFAMILY CHY zinc finger-like 984 1047 IPR037274 GO:0008270
Lele05g1784 1236 ProSiteProfiles Zinc finger RING-type profile. 1120 1162 IPR001841 -
Lele05g1784 1236 Gene3D - 1191 1231 - -
Lele05g1784 1236 ProSiteProfiles Zinc finger CTCHY-type profile. 1056 1119 IPR017921 -
Lele05g1784 1236 CDD RING-H2_Pirh2 1119 1162 - -
Lele05g1784 1236 Pfam Hemerythrin HHE cation binding domain 652 809 IPR012312 -
Lele05g1784 1236 Pfam Hemerythrin HHE cation binding domain 51 177 IPR012312 -
Lele05g1784 1236 Pfam Hemerythrin HHE cation binding domain 303 437 IPR012312 -
Lele05g1784 1236 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 695 1231 - -
Lele05g1784 1236 SUPERFAMILY RING/U-box 1117 1172 - -
Lele05g1784 1236 SMART ring_2 1120 1161 IPR001841 -
Lele05g1784 1236 FunFam Zinc finger protein-related isoform 1 1115 1164 - -
Lele05g1784 1236 ProSiteProfiles Zinc finger CHY-type profile. 984 1053 IPR008913 GO:0008270
Lele05g1784 1236 Pfam Zinc-ribbon 1167 1224 IPR039512 -
Lele05g1784 1236 CDD Hr-like 306 435 - -
Lele05g1784 1236 CDD Hr-like 49 175 - -
Lele05g1784 1236 Pfam CHY zinc finger 991 1066 IPR008913 GO:0008270
Lele05g1784 1236 Gene3D nmb1532 protein domain like 44 195 - -
Lele05g1784 1236 Gene3D nmb1532 protein domain like 306 452 - -
Lele05g1784 1236 CDD Hr-like 654 808 - -
Lele05g1784 1236 SUPERFAMILY Zinc hairpin stack 1057 1113 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1784 Lele-ChrLele05 11835021 11845044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1784 1 1236 C2H2 Transcription Factor Family AT3G18290 66.402 0.0 1677