Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1779 ATGTCTACTTCAAAGAGCTGCGAGAGCAGTTGCAGTGAAGATGATAATGAACTCAGGAGAGGACCTTGGACTCTTGAAGAAGATACTCTTTTAACTCAGTACATCTCTGCTCATGGGGAAGGACGATGGAATTTGCTGGCAAAACGTTCAGGGTTGAAGAGAACAGGGAAGAGTTGCAGATTAAGATGGCTTAATTATCTGAACCCACAAGTAAAGCGAGGAAATTTATCCCCAGAAGAGCAGATTTTGATCCTTGAACTCCACTCAAAGTGGGGCAACATGTGGTCGAAGATTGCACAACATCTTCCTGGGAGGACAGACAATGAAATCAAGAACTACTGGAGAACTCGGATTCAGAAACAAGCAAGATACTTGAATATTGACACAAACAGCACAGAGTTTAAAGAAATCGTCAGGCGATTTTGGATGCCAAGATTGCTGCAGAAAGCAAGAGAAACAGCTTCCCCTCTTCCTCCTGCCATGTCATCAATCCAAAACCAAACGATTCCTAATTTGCCTACTGACAGTGTTTCTGTGTTCACAAATAGTGACAGTATTACCAACAACAACACAGATTCCTTGGCAGGGACCTAA 594 0.4293 MSTSKSCESSCSEDDNELRRGPWTLEEDTLLTQYISAHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLNPQVKRGNLSPEEQILILELHSKWGNMWSKIAQHLPGRTDNEIKNYWRTRIQKQARYLNIDTNSTEFKEIVRRFWMPRLLQKARETASPLPPAMSSIQNQTIPNLPTDSVSVFTNSDSITNNNTDSLAGT 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1779 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 71 IPR017930 -
Lele05g1779 197 FunFam MYB transcription factor 76 118 - -
Lele05g1779 197 CDD SANT 77 116 IPR001005 -
Lele05g1779 197 CDD SANT 22 67 IPR001005 -
Lele05g1779 197 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Lele05g1779 197 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Lele05g1779 197 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Lele05g1779 197 SMART sant 19 69 IPR001005 -
Lele05g1779 197 SMART sant 72 120 IPR001005 -
Lele05g1779 197 Gene3D - 20 72 - -
Lele05g1779 197 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Lele05g1779 197 Gene3D - 77 121 - -
Lele05g1779 197 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Lele05g1779 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 122 IPR017930 -
Lele05g1779 197 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 164 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lele05g1779 197 FunFam Myb transcription factor 20 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1779 Lele-ChrLele05 11809449 11810246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1779 15 197 MYB Transcription Factor Family AT1G68320 60.963 2.51e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele05g1779 Myb_DNA-binding 9.9e-16 CL0123