Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1771 ATGGAGGAAAACAATAATCTACCTCCTGGATTCAGATTCCATCCAACAGATGAAGAGCTCATAAACTATTATCTAACAAGTAAAGTTTCTGATGCTAATGGCTTCACTTGCAAAGCTATAGCAGTGGTTGATCTCAACAAGTCTGAACCTTGGGACCTTCCGGCTAAGGCTTCCATGGGAGACAAGGTATGGTACTTCTTCAGTCTAAGAGATCGGAAATATCCCACCGGACTCCGAACCAACCGAGCCACAGAAGCAGGCTACTGGAAAACCACAGGCAAAGACAAAAATATCTTTCACGGCGGCGCGTTGGTCGGCTTCAAGAAAACCCTCGTCTTCTACCAAGGAAGAGCTCCTCATGGCCTCAAAACCAATTGGGTTATCCATGAATACCGCCTCCACAATATGCCCCATTTTGCACCTTCCAAGGAAGAATGGGTTGTTTGCAGGGTGTTCCAAAAGAGCATATCAACAGGGAAAAAACCTCAGGAGATGACATCATCGTCGCAAGTATCTTTAGATTCACCATGCGATGCAAACAGTTCAATGGTGAATGAACTTGCTAATTTTACTAGTCTTGCGAATTCCTCAACAGGATTCACAAACAACGTTAATAATAATGGCGATCACATGAGTAATATAAACACAAACATGAACTTGAGCAGCAATTGGTCATCACTATCATCAGCTGCAACAGTGCAAGTTCCGTCGTCTCTTGTTCCATGGCCTGCATCAGCTTCTCGAGGGCTAATGCTTAATCCCAATCAGCTGTCAGTGAACTCCTTGCTTCTCAAAGCATTGCAGCTCAAGAACATTAATGATCACTTTGTTGCATCATCGTACATGTCTCAAGCAGCAGTTTCCAACAACATTGGAGGAACTCATGATCATGTCAGTGCTTCTCATCAGCCGGATCAACCGTTCAATCTGGACTCGGCCAATGCAAAGGCAAAATTTGATGAAACTGTTGAAGTGCATGTAAGATTGGGTATTGAATCAAAGCGAACAGAACTGGGGCTGGAGTTGTTAGTTGCAGTGATAATGGCGGGAAAACAAATTTCTGGCGAAGGCCTGTCGGCGAACCTCGCCGGGATGTCGAAGAACCAGCTATACGAGATCATGTCTCAGATGAAGAGTCTAATCGAACAGAACCAGCAGCAAGCGAGGCAGATCCTCATTCAGAATCCGATGTTAACTAAAGCGCTTTTTCAGGCGCAAATTATGCTTGGAATGGTGCAGCCCCCTCCAGCGATTCCCAAAATTCAGCCAACAGTCTCACAGAGCACTCAGCAGCCAGTACAGTTGGCGCCACAGCCAAACATTCAGCCTGCTCCATTTTTGCCTGGGCAAGGTGGTCTACATGATCAAGCAAGTGTATCTCAAAACCAAATTCTTCCGAGGAAACACCAAAACCAACCTCCAGTGTCCATCTCATCTGCTGCTATCCCTTCAGCAAGTCATCAATCTCAGCCCATGCATGCACATTCTTTGCAGGGGCCACAACAACCTAAAGGACATCTGATTTCCCAAATGGCCCACGTGTCTCTTCCACAATCATCACAACTTCCTAATGTACCTCCACCCTCTCTTCATTCATCTTCACAGCCCCATCAAACCCAAATTCCAAATGTTTCCACTCAATTGCAGCAACCATTGCAGGCGCTGGGATTTCCACATATGCCACTGCAACCACCAATGCAATCACAGCCCAGACCACCTTCAGGGCCCAACTTTCATCACCAGTATCCCCCACAAATGGGTGCCAATATGGGTTTTCCACATGCCAGTGGTCCTCACAATCTTCCACAACCCATGTTTCATCCAGGTGCGAAGCCAGCAAGTGTTGGGTCATCATTTCCACAGGGTTTGACTCCAGTTCCAAGTCAACCAGCTACCCAGTCACCTTATCAGGTTGGGGGAGCCGGAAATGCGGTTCCAGTTGATAGAGGGTCTTCTAGGATACCTGGTCTCTCGGAAAACATGACACAACTTTCTGGTCCTTCTGGAGTTCCATCATTAGTTCCTGGCCAGATGGGCGTTGGCAATCCGCTTCTTAGGCCTCCTTCATTGACACCTGAGATGGAGAAGGCACTACTTCAGCAGGTCATGAGCCTCACACCAGAGCAGATAAATCTCCTGCCTCCAGAACAAAGGAATCAAGTGCTACAACTGCAACAAATGTTGCGCCAATGA 2193 0.4688 MEENNNLPPGFRFHPTDEELINYYLTSKVSDANGFTCKAIAVVDLNKSEPWDLPAKASMGDKVWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKNIFHGGALVGFKKTLVFYQGRAPHGLKTNWVIHEYRLHNMPHFAPSKEEWVVCRVFQKSISTGKKPQEMTSSSQVSLDSPCDANSSMVNELANFTSLANSSTGFTNNVNNNGDHMSNINTNMNLSSNWSSLSSAATVQVPSSLVPWPASASRGLMLNPNQLSVNSLLLKALQLKNINDHFVASSYMSQAAVSNNIGGTHDHVSASHQPDQPFNLDSANAKAKFDETVEVHVRLGIESKRTELGLELLVAVIMAGKQISGEGLSANLAGMSKNQLYEIMSQMKSLIEQNQQQARQILIQNPMLTKALFQAQIMLGMVQPPPAIPKIQPTVSQSTQQPVQLAPQPNIQPAPFLPGQGGLHDQASVSQNQILPRKHQNQPPVSISSAAIPSASHQSQPMHAHSLQGPQQPKGHLISQMAHVSLPQSSQLPNVPPPSLHSSSQPHQTQIPNVSTQLQQPLQALGFPHMPLQPPMQSQPRPPSGPNFHHQYPPQMGANMGFPHASGPHNLPQPMFHPGAKPASVGSSFPQGLTPVPSQPATQSPYQVGGAGNAVPVDRGSSRIPGLSENMTQLSGPSGVPSLVPGQMGVGNPLLRPPSLTPEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1771 730 MobiDBLite consensus disorder prediction 611 637 - -
Lele05g1771 730 MobiDBLite consensus disorder prediction 617 637 - -
Lele05g1771 730 MobiDBLite consensus disorder prediction 420 455 - -
Lele05g1771 730 Pfam Hinge domain of cleavage stimulation factor subunit 2 356 414 IPR025742 -
Lele05g1771 730 FunFam Cleavage stimulation factor subunit 2 689 730 - -
Lele05g1771 730 MobiDBLite consensus disorder prediction 518 544 - -
Lele05g1771 730 FunFam NAC domain-containing protein 100-like 16 158 - -
Lele05g1771 730 SUPERFAMILY NAC domain 4 154 IPR036093 GO:0003677|GO:0006355
Lele05g1771 730 Gene3D - 347 416 - -
Lele05g1771 730 MobiDBLite consensus disorder prediction 556 579 - -
Lele05g1771 730 Gene3D - 301 339 - -
Lele05g1771 730 MobiDBLite consensus disorder prediction 482 504 - -
Lele05g1771 730 MobiDBLite consensus disorder prediction 422 437 - -
Lele05g1771 730 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 348 730 - -
Lele05g1771 730 Gene3D - 691 730 IPR038192 -
Lele05g1771 730 Gene3D NAC domain 16 157 IPR036093 GO:0003677|GO:0006355
Lele05g1771 730 MobiDBLite consensus disorder prediction 563 579 - -
Lele05g1771 730 ProSiteProfiles NAC domain profile. 7 154 IPR003441 GO:0003677|GO:0006355
Lele05g1771 730 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Lele05g1771 730 Pfam Transcription termination and cleavage factor C-terminal 696 730 IPR026896 GO:0031124
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1771 Lele-ChrLele05 11739462 11750797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1771 1 312 NAC Transcription Factor Family AT3G18400 52.679 2.78e-95 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele05g1771 NAM 1e-36 No_clan