Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1705 ATGTCCCGTAGGAAAAAGACACGATGGTACCACTGGAGCCTCGACGAAGCCAAATCCAAGAATCAGTGCAAATTAATATTGCAGAACCCGGAGGATTATACCATGGCAGATTATGATCACCAGCCGCTTGGAAATCGAAAATGTACGCCTCCCAAGGACTTTGTCTGTCCAATAACTAGCAATCTATTTAATGATCCAGTGACTCTTGAGACAGGACAGACATATGAAAGGAAAGCTATCGAAGAATGGTTCAACCGGGGAAACTCAACCTGTCCAATCACCCGCCAGAAGCTGCAAAATACCCAGCTGCCCAAAACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACAGAATCCCAATTCAATCCCGTCTCCATCTCCATCTGAGAGTCTACATACTGAAGCTGAGGTACCAATCAAGTCAACAACGCCTTCAACTTCTCCTAATAGTGTTATAACTCAAGCCAATGTCGATGGGATGATTGGTGAGTTACGACATGCAATTAACAACCTGTATATGTCAGAGATCCTCGAGGAGTCTGAAATGGCCGTGCTTCAAATTGAGCAATTTTGGAAAGAAGTAAACCTGGGAGTGGATATCCAGAGCATGTTATCAAAACCTCCAATCATTAATGGGTTCATGGAGATTCTATTTAATTCTGTTGATCCCCAGGTGCTTCATGCAACAGTTTTTCTTCTGGCTGAGTTGGGTTCTACGGACAACGCTGTTATTCAGACTCTTACCCGCGTGGACTCGGATGTGGAATGTATTATGGCGCTTTTCAATAATGGTTTGACCGAGGCTGTTGTATTGATATATCTCCTGAAGCCTTCTACTACGGCTCTTGCAGAAATGGCCATATGGGAGTCTCTCGTAACGGTTTTCGATAAGAAAGAGGAGGACTTGCTTAAGATGTGCATAAAGCCCAAGTCAGCTGCGGTACTTTTACTGGCACAGATTCTTGGAAGCAATGAGGAGAGAATTGCATCTTCGGTAGCCAAGACTTTGATAAATGGTAGAGTAATTGAATGTATATTTGGCAGTTTCCGAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGTTGAGATCTTATTAAGATGCATCCAGGAGGATGGAACTTGCAGGCATCTCACTGCTGAAAAAGTTGAGCTGTCTCCCGTTTTGGAAAGCTTCATTGGGGCGAATGATGTAGAACGTTTTAAGACAATCCAATTTTTTTCCGAGTTAGTCAAATTAAATAGGAGGACATTGAATGAACAAATCCTCCACATTATAAAGGAAGAAGGTGCTTTCAGTACAATGCACACTTTCCTCGTTTATATGCAGACAGCCCTTCAAGATCAATGTCCAGTTGTGGCTGGCCTCTTACTTCAACTTGATCTTCTGGTAGAACCAAGAAAGATGAGTATATACCGTGAAGAGGCTATAGATACTCTTATTTCATGCCTCAGAAACAATGATTTCCCTGCTACCCAAGTAGTAGCTGCTGAGACAATAGCGTCATTACAAGGGAGATTCAACTTCGCCGGAAAGCCTCTTATCAGAGAAGTCCTTCTCAAACGTGCTGGCTTTAACATAAATCATAGAAGTCTTGATCAGATGGACCATATCAGCAATAGCAGTGGAGAACTTGAAACGAATCCAGAAGAAGAGAAGGCTGCTGATGATTGGGAGAGAAAAATTGCGTCTGCTTTAGTTGGCCATGAGTTTGGTCTACTTTTTGAGGCTTTAGCTGAAGGCCTGAAAAGCCGAAGCACACAACTAAGTTCTGCATGCTTTATATCAGCCACATGGCTTACATACATGCTTACCATTCTACCAGATACAGGAATAAGAGGAGCAGCCTGTGTCTGCATGCTCAAGCGCTTTGTATCTATATTAAAATCTGCTAAGGACACTGAAGACAGAATCCTTTCTATGCTTGCTTTAAATAGCTTTCTTCAGTACCCTGATGGATTGCTTGATCTTACTTCCTACACTAAGGATGTCCTAAAAGGTCTGAGAGAGCTAAAGAGATTCTCCCCTCTGGCATCTGAAATGCTTAAAGTTCTGGTTGAAGAGAATGAATCTAAAGCTGGCATCTGGACGCATAAAGAGTTAATTCCGGTAGATTGCAGTGAGAATGGAGAAGTGTTGTCTGTCATATGTCATAAGGATAAAATCTTTTCAGGCCATTCAGATGGAACTATCAAGGTCTGGGCAGTAAGGGGGAGCTTATTCCATCTTATACAAGAGACACAAGAACACATGAAGGCGGTTTCAAGTTTGGCAATTTCAGAATCTGGTGACAGATTATACAGTGGTTCACTTGATCGATCTGTAAAGGTGTGGTCTATAGGAAAGTCAGCAATACAGTGTGTGCAGGTGCATGATATGAAAGATCAAATTCATAATTTAGCTGTAGCCAATAGCAGATTCTGCTACAGTCCTCGTGGAAATGGTGTTAAGGTGCTAGATGAAATTATGAATCCTTCACGTTCTTGTGTACTAGTTAAAAAAGCAAAATCATTTATTCTTCTAAAGTCTGAAACTACGTTGTTATTTCTTAAGGTTCAATCATTGAATGGAGAATCGAGGCTGTTAAACAGTAACAAATACGTCAGGTGTTTGGCTCTTGTTCATGAGAGACTATACTGCGGATGCAACGACAACAGTATTCAGGAGATAGATTTGGAAACAGGAACATTGAATACCATTCAAAGTGGTTCTAAAAGATTGCTTGGTAAAGCAAATCCCGTTTATGCCATACAAGTGCGTGGTGAACATATATATGCAGCTAATTCTTCCTTGGATGGAGCTGTTATAAAGATATGGAACACTTCCAATTACAGCATGATTGGATCACTGGGAATTGCATCAGAAGTGAGGACGATGGCAACGAGCTCAGAATTAATTTACTTGGGATGCAGGGGAGGAGCTGTGGAAATTTGGGACAAGAAGAAACAGAACAGAATTGATACATTACAGATTGGTACAAATGGTAAGATTGCTTGCATGGCTGTCAATGGAAATGAAGAAATTTTTGTCATTGGGACCTCTGATGGCCGAATTCAGGCATGGGGAATAAACTAA 3081 0.4164 MSRRKKTRWYHWSLDEAKSKNQCKLILQNPEDYTMADYDHQPLGNRKCTPPKDFVCPITSNLFNDPVTLETGQTYERKAIEEWFNRGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEQNPNSIPSPSPSESLHTEAEVPIKSTTPSTSPNSVITQANVDGMIGELRHAINNLYMSEILEESEMAVLQIEQFWKEVNLGVDIQSMLSKPPIINGFMEILFNSVDPQVLHATVFLLAELGSTDNAVIQTLTRVDSDVECIMALFNNGLTEAVVLIYLLKPSTTALAEMAIWESLVTVFDKKEEDLLKMCIKPKSAAVLLLAQILGSNEERIASSVAKTLINGRVIECIFGSFRAEWAEERIAAVEILLRCIQEDGTCRHLTAEKVELSPVLESFIGANDVERFKTIQFFSELVKLNRRTLNEQILHIIKEEGAFSTMHTFLVYMQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNNDFPATQVVAAETIASLQGRFNFAGKPLIREVLLKRAGFNINHRSLDQMDHISNSSGELETNPEEEKAADDWERKIASALVGHEFGLLFEALAEGLKSRSTQLSSACFISATWLTYMLTILPDTGIRGAACVCMLKRFVSILKSAKDTEDRILSMLALNSFLQYPDGLLDLTSYTKDVLKGLRELKRFSPLASEMLKVLVEENESKAGIWTHKELIPVDCSENGEVLSVICHKDKIFSGHSDGTIKVWAVRGSLFHLIQETQEHMKAVSSLAISESGDRLYSGSLDRSVKVWSIGKSAIQCVQVHDMKDQIHNLAVANSRFCYSPRGNGVKVLDEIMNPSRSCVLVKKAKSFILLKSETTLLFLKVQSLNGESRLLNSNKYVRCLALVHERLYCGCNDNSIQEIDLETGTLNTIQSGSKRLLGKANPVYAIQVRGEHIYAANSSLDGAVIKIWNTSNYSMIGSLGIASEVRTMATSSELIYLGCRGGAVEIWDKKKQNRIDTLQIGTNGKIACMAVNGNEEIFVIGTSDGRIQAWGIN 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1705 1026 MobiDBLite consensus disorder prediction 120 153 - -
Lele05g1705 1026 SUPERFAMILY ARM repeat 170 670 IPR016024 -
Lele05g1705 1026 SMART WD40_4 945 981 IPR001680 GO:0005515
Lele05g1705 1026 SMART WD40_4 906 942 IPR001680 GO:0005515
Lele05g1705 1026 SMART WD40_4 699 737 IPR001680 GO:0005515
Lele05g1705 1026 SMART WD40_4 984 1024 IPR001680 GO:0005515
Lele05g1705 1026 SMART WD40_4 742 781 IPR001680 GO:0005515
Lele05g1705 1026 SMART WD40_4 860 893 IPR001680 GO:0005515
Lele05g1705 1026 Gene3D - 825 1026 IPR015943 GO:0005515
Lele05g1705 1026 ProSiteProfiles Trp-Asp (WD) repeats profile. 749 782 IPR001680 GO:0005515
Lele05g1705 1026 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 749 782 - -
Lele05g1705 1026 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 127 IPR013083 -
Lele05g1705 1026 SUPERFAMILY WD40 repeat-like 720 1025 IPR036322 GO:0005515
Lele05g1705 1026 ProSiteProfiles Trp-Asp (WD) repeats profile. 992 1026 IPR001680 GO:0005515
Lele05g1705 1026 Pfam WD domain, G-beta repeat 748 781 IPR001680 GO:0005515
Lele05g1705 1026 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 992 1026 - -
Lele05g1705 1026 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 853 1025 - -
Lele05g1705 1026 SUPERFAMILY RING/U-box 42 127 - -
Lele05g1705 1026 CDD RING-Ubox_PUB 54 96 IPR045210 -
Lele05g1705 1026 Gene3D - 695 823 IPR015943 GO:0005515
Lele05g1705 1026 SMART Ubox_2 53 117 IPR003613 GO:0004842|GO:0016567
Lele05g1705 1026 Pfam U-box domain 51 121 IPR003613 GO:0004842|GO:0016567
Lele05g1705 1026 ProSiteProfiles U-box domain profile. 49 124 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1705 Lele-ChrLele05 11153312 11158232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1705 39 134 U-box Gene Family AT1G24330 45.000 4.71e-19 90.9