Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1693 ATGACAAACTCCCTTCGCCGTCCTACCATTTTCATCGTTATCTCGAGATTTTGCTTCAGAACCATGAGCCCCCAACTGGGTCTTCTTCGTCTCTCTCTTCTCTTTCTACTTTTCTTCCATGTTACAGCACAACAACAGATGAACGATAGTGCACCTTCACTCGATGGAATCGCCAATTTCCAACCAAGTTTAGCAGTTGTCTTAGGAATCTTATGTCTTATGTTTTCACTTACATTCATTTTTCTCTTGTATGCCAAGTTCTGTCAACGCAGAGCTACAGCTCACGTTGACCTGGAGAACCTCCCTGAACTTGTGAGATCAAGGTCCAGAAGATTCTCAGGAATCGACAAGACTGTCATAGAATCTCTCCCCTTCTTCAGATTCTCTGCCCTCAAAGGCTCAAAAGAAGGTCTTGAATGTGCAGTTTGTTTGTCAAAGTTTGAAGACATTGAAATCCTTAGACTTCTTCCCAAATGCAAACACGCCTTCCACATCGATTGCATCGATCATTGGCTCGAGAGACACTCTAGTTGTCCTCTTTGTAGACGAAAGGTTAATTCCGATGACCCAACCATGCTTACATATTCAAACAGTTTGAGGCTTCTAATAACAAACCAGTCAGAGAATAATGGTGAAGAACCCAATATAGAGATCTTTGTTCAAAGGGAAGAAGAACGCCATGGTTCTTCTAGATTCAGAATTGGAAGCAGCTTAAGGAAATCTGGAAAGGGTATTATGAAAGAAGAAGAATTGCCCATCCAAGAAGAAGAGACAGAGCATGATGGTGGTGGAAAGTTGTATCACAGACATAACCACAAGATTACTATAAGTGATGTTGTTTTCAAGCACCGATGGAGCAACGTGAGCTCTTCGGACCTGATGTTTTTGAGTTCAGAGATGATTAGTTCTGGGCAGAGCAAAAGATTCCATCTTTCAGAACCAAATGGTGAGAATATTCGAGCTTCAACATCAGGGGAAAATGGACAGATCATCAACAACATAAAGGAGGAGATGGAGAGAAAGATATCCATAGAGACAAAGTTGGGTGCGTTAAACTTTGTTTTAGATACTTCAGATTGTGCAGGAACTTCATCATCTTCAATTCATACGTCAAAATATGTGAATCCGAGGGAGAAAAGATCGATGTCGGAAATCACTGGTGTGTCTAGATTTGGAGATTTGGGTATGAGAAGAGACAGAGTGTTGAGGGATTCTTCAGTGATTGCAAGTGATGTTAAAGAGGAAAGAAGGAGACAGCTATGGCTGCCAATAGCCAGAAAAACTGTTCAATGGTTTGTGAATAGAGAAAGATCTCAGCCATTAAATGTATAG 1332 0.4114 MTNSLRRPTIFIVISRFCFRTMSPQLGLLRLSLLFLLFFHVTAQQQMNDSAPSLDGIANFQPSLAVVLGILCLMFSLTFIFLLYAKFCQRRATAHVDLENLPELVRSRSRRFSGIDKTVIESLPFFRFSALKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHIDCIDHWLERHSSCPLCRRKVNSDDPTMLTYSNSLRLLITNQSENNGEEPNIEIFVQREEERHGSSRFRIGSSLRKSGKGIMKEEELPIQEEETEHDGGGKLYHRHNHKITISDVVFKHRWSNVSSSDLMFLSSEMISSGQSKRFHLSEPNGENIRASTSGENGQIINNIKEEMERKISIETKLGALNFVLDTSDCAGTSSSSIHTSKYVNPREKRSMSEITGVSRFGDLGMRRDRVLRDSSVIASDVKEERRRQLWLPIARKTVQWFVNRERSQPLNV 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1693 443 CDD RING-H2_PA-TM-RING 139 182 - -
Lele05g1693 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 190 IPR013083 -
Lele05g1693 443 SMART ring_2 140 181 IPR001841 -
Lele05g1693 443 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Lele05g1693 443 Pfam Ring finger domain 139 182 IPR001841 -
Lele05g1693 443 SUPERFAMILY RING/U-box 119 188 - -
Lele05g1693 443 FunFam RING-H2 finger protein ATL43 115 189 - -
Lele05g1693 443 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 41 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1693 Lele-ChrLele05 11043183 11045443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1693 28 443 C3H Transcription Factor Family AT4G28890 44.098 1.65e-102 310