Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1678 ATGGATGACTTCTTTGTTCCTGAGGCCAATAACCTGGGCGCCATGGCCTCCCTGCACCCACCTCCCAACTACCCCTTCGATTTGGGGGCTTTCGACCTCGACGAGGCTCTAGCCTCCGCCGGCGATTCATGCCGCCGATTTGCCCAGTCTCAAAGCTTCGTGGCGACATTGCCGGTGGTTCAAGACATGGACGGCGATGCTGTTTGCTCGGTTTGCATGGAAGGCTTTGACTCCGACGGAAACAAACGAATACCCTGCGGCCATGTGTACCACTCAAGCTGCATCACCGCCTGGATCTCTCTCTGCAACTCTTGCCCCCTATGCCGCTCCCATATCTTCCTCCCCTCCTCTAATTAA 357 0.5658 MDDFFVPEANNLGAMASLHPPPNYPFDLGAFDLDEALASAGDSCRRFAQSQSFVATLPVVQDMDGDAVCSVCMEGFDSDGNKRIPCGHVYHSSCITAWISLCNSCPLCRSHIFLPSSN 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1678 118 SUPERFAMILY RING/U-box 61 115 - -
Lele05g1678 118 SMART ring_2 69 108 IPR001841 -
Lele05g1678 118 ProSiteProfiles Zinc finger RING-type profile. 69 109 IPR001841 -
Lele05g1678 118 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 46 110 - -
Lele05g1678 118 Pfam Ring finger domain 69 109 IPR001841 -
Lele05g1678 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 117 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1678 Lele-ChrLele05 10940813 10941169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1678 50 114 C3H Transcription Factor Family AT1G68180 37.143 8.87e-12 57.8