Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1644 ATGTCTGCCAACTCCGACGGCGATGCCAGCGGCGGCGATTACTCTCCGTACTACCTGCAAGAGGCATTCACGGCACTCCAGCGTTATCTTCCGTCGAACGACGCAGATATTGACTCCGATTCCGAGATTCTTGGTCGAGAGTTGGACGCTCCGGTGGATGCCTACTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTGAGACGGTGCGCACGTGGCCGTTCACACGACTGGACTGAGTGTCCTTATGCTCATCCTGGCGAGAAGGCTCGCCGTAGGGATCCGAGGAAGTATCACTATTCGGGTACTGCATGCCCTGATTTCCGCAAAGGGAATTGCAAAAAGGGAGATGCATGCGAGTTTGCTCATGGCGTGTTTGAGTGCTGGCTTCATCCAGCCCGTTATCGTACACAGCCATGCAAGGACGGCATAGGTTGCCGCCGAAGGGTCTGTTTCTTTGCTCACACGCCGGAGCAACTCCGGGTCCTTCCTCAGCAGAGTCCTAGGAGCGCTAACTCGGTGGACTCCTATGATGGGTCTCCTCTTAGGCAAGCAATTGAGTCTTCTAGCGCAAAAGCGCTTCCATTCATGTCGTCTCCGGGTTCTATTTCCCCTCCAGCAACTCCTCCGGCAGAATCTCCTCCTATGTCGCCGATGACACAGTCTCTGAGCCGCTCTCTGGGTTCGAGCTCCATCAATGAGATGGTGGCTTCCCTGCGAAATTTACAGCTTGGAAAGGTAAAGTTCCTGCCCCCTTCTAGAAATGTTCCAATGGGGTCTCCCCGTTTTGGATCTCCACGCGGATCGGTGCTCCGTCCAGATTTCTGCAGCCTTCCGTCAACCCCTACTGGGCCACCGACTCGTTCTGGTGCCAGCTATTTCGAACTTTGGGATCAGAATTGTGAGGAGGAGCCTGCCATGGAGAGGGTGGAATCTGGAAGGGGCATAAGGGCGAAGATATTTGAAAAACTTAGCAAAGAGAACTCTCTGGATCGATCGGGCCCCAGCGCATCCGTTGGAGCCCCGAATGTTGGTTGGGTTTCGGAGCTGTGCATGACGTTAGCGTTTGTCACGGATATGGGATTTGTTGGCTGTGATCTAGTGATGGGTGTCGCATGTGCCTTTCGAATTATGGGTCACTATGCTTTGGGGCAGGTCATAAGGAAATTCCAGTTTTATGAGAAGGCAACGCTTTTAAGAACACTAGCAATGGTTCTTGGAGTAGCTGGTCTTGCCATCCTTATGTTAGCCCCATATGCCCCAGAGAATCATGACTTGTTTGGCGTATTCCTGATTTTGTCAGACACGCGAAGGATTTCCTCCTCTGAAGTAACAGTGGGATCTCCTTAG 1350 0.5289 MSANSDGDASGGDYSPYYLQEAFTALQRYLPSNDADIDSDSEILGRELDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGIGCRRRVCFFAHTPEQLRVLPQQSPRSANSVDSYDGSPLRQAIESSSAKALPFMSSPGSISPPATPPAESPPMSPMTQSLSRSLGSSSINEMVASLRNLQLGKVKFLPPSRNVPMGSPRFGSPRGSVLRPDFCSLPSTPTGPPTRSGASYFELWDQNCEEEPAMERVESGRGIRAKIFEKLSKENSLDRSGPSASVGAPNVGWVSELCMTLAFVTDMGFVGCDLVMGVACAFRIMGHYALGQVIRKFQFYEKATLLRTLAMVLGVAGLAILMLAPYAPENHDLFGVFLILSDTRRISSSEVTVGSP 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1644 449 ProSiteProfiles Zinc finger C3H1-type profile. 100 126 IPR000571 GO:0046872
Lele05g1644 449 PANTHER UNKEMPT FAMILY MEMBER 22 351 IPR045234 -
Lele05g1644 449 SMART c3hfinal6 134 157 IPR000571 GO:0046872
Lele05g1644 449 SMART c3hfinal6 99 125 IPR000571 GO:0046872
Lele05g1644 449 MobiDBLite consensus disorder prediction 190 228 - -
Lele05g1644 449 Gene3D - 100 163 - -
Lele05g1644 449 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 104 124 IPR000571 GO:0046872
Lele05g1644 449 MobiDBLite consensus disorder prediction 202 216 - -
Lele05g1644 449 FunFam Zinc finger CCCH domain-containing protein 66 57 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1644 Lele-ChrLele05 10677755 10679807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1644 55 257 C2H2 Transcription Factor Family AT5G12850 50.000 5.70e-58 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele05g1644 zf-CCCH 4.6e-06 CL0537