Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1623 ATGAATTCTCCATATCTGTACGTGTACCAATTATTTGTCATCAGGTTTAGAATGAAGCGTCAAGTATTAGTAGTGAGAAAAACTGAAGGTGGTGGAAGAGGTTCCACCAGCAGGAGCGTGAGGTATGGAGAGTGTCAGAAGAATCATGCGGCTAATTCCGGCGGATACGCCGTCGATGGTTGCCGGGAATTCATTGCCTCCAGCGGGGAGGAAGCAAGTTCTGCTCTTACATGTGCTGCCTGTGGATGCCACAGAAACTTCCACAAGAGATTGGTGGACACTTCTACCGATGAGTCCTCTTCACATCCTTCAAATTAA 318 0.4717 MNSPYLYVYQLFVIRFRMKRQVLVVRKTEGGGRGSTSRSVRYGECQKNHAANSGGYAVDGCREFIASSGEEASSALTCAACGCHRNFHKRLVDTSTDESSSHPSN 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1623 105 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 41 90 IPR006456 -
Lele05g1623 105 Pfam ZF-HD protein dimerisation region 40 91 IPR006456 -
Lele05g1623 105 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 42 91 IPR006456 -
Lele05g1623 105 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1623 Lele-ChrLele05 10543434 10544751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1623 19 104 Zinc finger-homeobox gene family AT1G18835 60.465 1.52e-29 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele05g1623 ZF-HD_dimer 9e-28 No_clan