Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1622 ATGACTGGGTGGGTCTTGGTGTCTTCCAAGTTCCGAACGTCATTCATGGAATTTATTATGAATTGTTTTGGATTTGAGACGTGTGAGAAGAAGAAACAAGCCGAGATGGGGAGAATGCCTTGCTGTGATAAGGAAGGGGTCAAGAAAGGACCTTGGACTCCCGAAGAAGATGTCATTTTGGTCTCTTATATCCAGGAACATGGGCCTGGCAACTGGAGAGCTGTGCCCACTAATACAGGGCTGGCACGGTGCAGTAAGAGTTGTAGACTTAGATGGACTAATTACCTAAAGCCAGGAATTAAACGTGGTAACTTCACAGACCAAGAGGAGAAGATGATAATCCATCTTCAAGCCCTTCTGGGCAACAGATGGGCAGCAATAGCCTCGTACCTTCCACAGAGAACCGACAATGACATAAAGAACTATTGGAATACCCATTTGAAGAAGAAGCTGAAGAAATTGCAAGCACCATCATCATCATCATCAGTTGGTCATGAGTCATCAATGCCACGAGGCCAGTGGGAAAGAAGGCTTCAAACCGACATCCACATGGCCAAGAGAGCTCTTAGCGAGGCTCTATCTCCAGATCACACACCTTCTTCCTTATCCTCCGAATCATCAAATCCCTCTAATAATAAGCCAGCAACATCCCAGTGCTTAACCTATGCCTCAAGTGCAGAAAACATAGCTCGTTTGTTGAAAGGATGGATGAAAAATCCACCAAAGCCGCCGTCCACAACAATCACACGAGGTTCTACAAATAACCTAGCTGCTTCAGCTTCAGCTTCGGGTAACGATACTGCTTCTAGCGAAGGAATTACCACTACAAGTTCGTCGAAGGGAAACGGCAGAACTGTTCAATTATCTTACACTAGTTTTGACTCCTTGTTGGGGTTTGAGTCTTTGGATTGCTCTTCGAATTCTGATTTTTCTCCAGAGGCTACTCTTGAAAGCAAGCCGAATTGTGAAGGGACCGAAATGCCCTTATATTTGCTTGAGAAGTGGCTTCTCGATGACGCTGCTATATATGATCACATCATCGTTTGA 1047 0.4499 MTGWVLVSSKFRTSFMEFIMNCFGFETCEKKKQAEMGRMPCCDKEGVKKGPWTPEEDVILVSYIQEHGPGNWRAVPTNTGLARCSKSCRLRWTNYLKPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQAPSSSSSVGHESSMPRGQWERRLQTDIHMAKRALSEALSPDHTPSSLSSESSNPSNNKPATSQCLTYASSAENIARLLKGWMKNPPKPPSTTITRGSTNNLAASASASGNDTASSEGITTTSSSKGNGRTVQLSYTSFDSLLGFESLDCSSNSDFSPEATLESKPNCEGTEMPLYLLEKWLLDDAAIYDHIIV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1622 348 Gene3D - 48 101 - -
Lele05g1622 348 SMART sant 48 98 IPR001005 -
Lele05g1622 348 SMART sant 101 149 IPR001005 -
Lele05g1622 348 MobiDBLite consensus disorder prediction 153 172 - -
Lele05g1622 348 CDD SANT 51 96 IPR001005 -
Lele05g1622 348 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Lele05g1622 348 SUPERFAMILY Homeodomain-like 46 143 IPR009057 -
Lele05g1622 348 MobiDBLite consensus disorder prediction 242 284 - -
Lele05g1622 348 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 36 266 - -
Lele05g1622 348 Gene3D - 104 179 - -
Lele05g1622 348 MobiDBLite consensus disorder prediction 194 217 - -
Lele05g1622 348 MobiDBLite consensus disorder prediction 191 217 - -
Lele05g1622 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 151 IPR017930 -
Lele05g1622 348 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Lele05g1622 348 Pfam Myb-like DNA-binding domain 102 147 IPR001005 -
Lele05g1622 348 MobiDBLite consensus disorder prediction 154 168 - -
Lele05g1622 348 CDD SANT 104 146 IPR001005 -
Lele05g1622 348 FunFam Transcription factor MYB30 103 161 - -
Lele05g1622 348 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Lele05g1622 348 MobiDBLite consensus disorder prediction 235 284 - -
Lele05g1622 348 FunFam MYB-related transcription factor 48 101 - -
Lele05g1622 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 100 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1622 Lele-ChrLele05 10523358 10525271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1622 36 341 MYB Transcription Factor Family AT5G62470 49.153 5.11e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele05g1622 Myb_DNA-binding 1.3e-14 CL0123