Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1620 ATGGAGGAGAGGAATGAGATGGATAAGATGAACGACGATACGATGTTGCCGGGTTTTAGGTTTCACCCCACGGATGAGGAGCTTGTTGATTTTTACCTCAGAAGAAAGATTCAGCAGAAATGTCTCCCTATTGAGCTTATCAAGCAAGTGGATATTTACAAATACGATCCATGGGATCTTCCAAAGCTGGCAAGCAGTGGGGAGAAAGAGTGGTATTTCTACTGTCCAAGGGATCGGAAATACAGGAACAGTCCACGACCAAACAGAGTGACTCGAGCTGGGTTTTGGAAAGCCACGGGAACAGACAGGCCTATATACTCATCATCGGAAGGAAAATGCGTCGGCCTGAAGAAATCTCTCGTCTTCTACAGAGGCAGAGCCGCCAAAGGCGTCAAGACTGATTGGATGATGCATGAGTTCCGCCTCCCTCCTTCGCCACATTCATCACCTCCTCCTCCTACGACGACGACGCCCAGGAATAAGCCCTTTGACAAAACCCTCCCTCCCCAGGATTCATGGGCCATTTGCAGGATATTCAAGAAAACAAACTCCATGTCCATGGCACACAAAGGTCTATCCCACACTTGGATGGCTCCTCAGTTCCCGGAGAGCATCATGGTGTCTGATATGTTCGCTCCTCAGAGTGCAAACCGTAATCACATGAGTTCAGAGAACTTGTCTTGCACCACAGAAATAGGATCAGCGTCAGAGAACTTGTCTAGTGCTAATTTCAATAATGCTTCCCAGATCCCTGTCGTCTCGAACAGTGACGTGGTAGCAGACACCTTAATGTTCTCGACGTTCGAATCATCAGGGCCTTGTGCCTATATAGGATTTGAAGGGCCTAACAATATCTTCAGTACACCTAATAATCAAGACGTACAAGGATTCAACATGGCTACATCTACAGTAGCAGAAGCTATTGGGTTTCCCTTCAGCTTGCCGCCACCAGTTTCAAACGATGCTTGGAAGCCTACTCTCTCATGGGAATCGCCACCTTGTCCTAGCGACATGTCTACTAATATATAG 1029 0.4742 MEERNEMDKMNDDTMLPGFRFHPTDEELVDFYLRRKIQQKCLPIELIKQVDIYKYDPWDLPKLASSGEKEWYFYCPRDRKYRNSPRPNRVTRAGFWKATGTDRPIYSSSEGKCVGLKKSLVFYRGRAAKGVKTDWMMHEFRLPPSPHSSPPPPTTTTPRNKPFDKTLPPQDSWAICRIFKKTNSMSMAHKGLSHTWMAPQFPESIMVSDMFAPQSANRNHMSSENLSCTTEIGSASENLSSANFNNASQIPVVSNSDVVADTLMFSTFESSGPCAYIGFEGPNNIFSTPNNQDVQGFNMATSTVAEAIGFPFSLPPPVSNDAWKPTLSWESPPCPSDMSTNI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1620 342 MobiDBLite consensus disorder prediction 141 166 - -
Lele05g1620 342 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 236 - -
Lele05g1620 342 Gene3D NAC domain 24 186 IPR036093 GO:0003677|GO:0006355
Lele05g1620 342 ProSiteProfiles NAC domain profile. 15 181 IPR003441 GO:0003677|GO:0006355
Lele05g1620 342 SUPERFAMILY NAC domain 10 181 IPR036093 GO:0003677|GO:0006355
Lele05g1620 342 MobiDBLite consensus disorder prediction 144 158 - -
Lele05g1620 342 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Lele05g1620 342 FunFam NAC domain-containing protein 35 24 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1620 Lele-ChrLele05 10510352 10511470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1620 2 204 NAC Transcription Factor Family AT5G39820 66.346 1.08e-97 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele05g1620 NAM 5.8e-38 No_clan