Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1604 ATGGCAGAATGTGTAAATAAGGCCACCCTTTTCTTCTTCTTGGCCATTTTCGCCATTTCTTCTCCATGCCTACAAGCCAACATCGCCGACTACGACGACTATTACATTAAACGATCCGAGGAAGCCCGTAGAGCCGCTCTTGAAGCCTACGAGCCCGACCCCTACAATGTCACCTCCGAACTCAATTTCCACGTTCACTTAGCGATGGAGGAGAGCAACGGGAGGGGACTGAAGAGGGCTCAATACAAGGGACCATGCATAGCCACTAACCCTATAGACAGGTGCTGGCGGTACAGGGCTGATTGGGCCACAGATCGAATGAGGTTAGCTAAATGTGTCAAGGGTTTTGGCCGGAAGACCATGGGAGGACTGGGCGGCCGGATATATGTGGTCACCGACCCCTCCGACAACGACTTGGTTAACCCGAAGCCAGGAACTCTGCAGTTCAGGGCGGTCCAGGACGAGCCATTGTGGATCATCTTCCAACGCGACATGACCATCATTCTGCAACAAGAGCTCATGGTTAACTCGCACAAGACCATCGACGGTCGTGGCGCCAACGTCCAGATCATCAAAGGTGCCAGCATTTCCTTGTTCATGGTCACCAACGTCATCGTCCACAACATTGGCATCCACAACGTCGTGCCCAAGCCAGGGGGTCTCATTAGGGACTCCACCCACCACTTCGGTACGAGAACCAGGAGCGATGGTGACGCCATCTCCATCTACGGCTCCTCCAACATCTGGAGCGATCATATTTCAATGTCCAATGCCGCTGATGGGCTCGTCGACGTCATCCAAGGCTCCACCGGCGTCACCATCTCTAATTGCCACATGACCGATCACAACGACGTGATGCTGTTAGGAGCAAACGATTTGTACACAGGGGACAAGGTGATGCAGGTGACGGTGGCGTTCAACCATTTCGGTCAGGGACTGATACAGAGGATGCCGAGGGCAAGATATGGATTCGTTCACGTGGTGAACAACGACTATAATCACTGGATCATGTACGCCATAGGTGGAAGCTCGGCGCCGACAATACTGTGTCAGGGGAACCGATTCACTGCTCCTAACGACAGAGCAGCTAAGGAGATAACGCACAGGGAGTACGCGACGCCGCAGCAATGGAGCTCGTGGAAGTGGACATCGTGTTAG 1158 0.5354 MAECVNKATLFFFLAIFAISSPCLQANIADYDDYYIKRSEEARRAALEAYEPDPYNVTSELNFHVHLAMEESNGRGLKRAQYKGPCIATNPIDRCWRYRADWATDRMRLAKCVKGFGRKTMGGLGGRIYVVTDPSDNDLVNPKPGTLQFRAVQDEPLWIIFQRDMTIILQQELMVNSHKTIDGRGANVQIIKGASISLFMVTNVIVHNIGIHNVVPKPGGLIRDSTHHFGTRTRSDGDAISIYGSSNIWSDHISMSNAADGLVDVIQGSTGVTISNCHMTDHNDVMLLGANDLYTGDKVMQVTVAFNHFGQGLIQRMPRARYGFVHVVNNDYNHWIMYAIGGSSAPTILCQGNRFTAPNDRAAKEITHREYATPQQWSSWKWTSC 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1604 385 Pfam Pectate lyase 172 355 IPR002022 -
Lele05g1604 385 PANTHER PECTATE LYASE 18-RELATED 42 384 IPR045032 GO:0030570
Lele05g1604 385 SMART amb_all 164 361 IPR002022 -
Lele05g1604 385 Pfam Pectate lyase, N terminus 27 73 IPR007524 GO:0030570
Lele05g1604 385 SUPERFAMILY Pectin lyase-like 90 383 IPR011050 -
Lele05g1604 385 Gene3D - 89 385 IPR012334 -
Lele05g1604 385 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Lele05g1604 385 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Lele05g1604 385 PRINTS Pollen allergen Amb family signature 380 385 IPR018082 -
Lele05g1604 385 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Lele05g1604 385 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Lele05g1604 385 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Lele05g1604 385 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1604 Lele-ChrLele05 10383322 10384670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1604 10 384 Polysaccharide Lyase AT1G14420 54.780 1.18e-156 447