Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1578 ATGGATGGGGATCAGGAAACAAGTGTGGCTGCATCATCATCATCAGTGACTCCGAAGAAGAAGAAGAATGGGTCCATTCGATCCATTTTCATGCACGCCGATCCATTAGATTGGTTCCTCATGATCCTCGGCCTCGTTGGGTCCATTGGCGACGGTTTCACCACCCCTCTTGTCCTCCTCATCAGTAGCCGCTTGATGAACAATATTGGCTCTGGTCCTACCCTCGATCCCAATGCTTTTACCCATTCCATTAACAAGGGGTATTGCTGGACAAGAACAGGGGAAAGACAAGCTGCGAGAATGAGAGCTAGGTATTTGAAAGCTGTGCTCAGACAGGATGTTGCTTACTTTGATCTGCACGTGACAAGCACGTCGGAGGTGATCGCCAGTGTCTCCAACGACAGCCTTGTAATTCAAGATGCTATTGCTGAGAAGGTTCCAAACTTCTTGATGAACGTGTTTATGTTCATCGGGAGTTACATAGCGGCTTTTGCAATGTTATGGAGGCTGGCTATTGTGGGCTTCCCATTCGTGGTGCTTTTGGTGATACCTGGTTTGCTTTACGGAAGGACTCTAATGGGGTTGGCGAGGAAGATCAGAGAAGAGTATAATCATGCTGGTACAGTTGCAGAGCAGGCAATTTCTTCCATAAGAACTGTGTATTCCTTCGTCCGAGAATGCAAAACCATAGCCGCTTTCTCTGATGCTTTACAAGGATCTGTTAAATTGGGTCTCAAACAGGGCTTAGCTAAGGGATTAGCCATCGGAAGCAACGGCATCGTCTTCGCCATCTGGTCTTTCATGTCCTATTACGGCAGCACCCTCGTCATGTACCACGGCGCTCAAGGCGGTACCGTCTTCGCTGTCGGAGCTGCCATTGCCGTCGGTGGACTATCTTTAGGGGCGGCTTTATCGAACATGAAGTACTTCTCGGATGCGAGCACAGCAGGGGAACGAATAATGGAGGGCTACGATACTCAGACAGAACAATTGAAAACCCAACAAGATGATGTTGTCCCTGCCCCGTCGTCTATATCAAACAGAGACATGAACAACACTAGTAGCCGTAGGCTTTCCCTGGTGAGTCGTTCTAGCTCTGCTAATTCAATGGCAAGGAATCCAGCTTCAGTTGCTGATGAAGACGATGGTCATCGTCATGTTACAGAAGATCAGAAATTCCCTGTTCCTTCGTTTCGGAGATTGTTGGCTCTTAATCTCCCAGAATGGAAGCAGGCAATTATGGGTTGTACAAGTGCTGTTCTCTTTGGTGCGGTTCAGCCATTAATTCTGGTTTCACTAGCTAACTTCTTTGATACTAACATGAAGAGAACAGATGACTTCAATGGTCAATCCCATGACCATGGAGGAGGCGGAAACGGCGGTGGTAATATAGGAGGAGAAGCAAGAGCTGCTTCGCAGAATTTGACTGACCCCTATCCCTTATTCTATGTGAAGTTAGTGAAACAAGCCTTTCAGAACCAAACAGAAAAATTTGATATGTTCGTGGCAATCATCAGAGATTTCAGGGCTCAAAGGATTGACATTGTTGGTCTCACAGAAAGTGTGAAGGAACTATTTAAAGGGCATAACCATTTGATTTCTGGATTCAATGTCTTCTTGCTCAAAGGCTACAAGATAACGCCTGATGAATATGGAGCTCCTCCAAAAAAAGTGGTTGCCCGTGAAGAAGCTCTGGGTTTTTTAGGCAAGATAAATGTTTTGCTCTCCCAGAAACGACTTCAAAATGAAGATCATGCTCTCCAATCATTCAGGGACACTATGAAACTGTTCCACGCAGGGAGAAAGGACGTAACTGAGGTCTATATGGAGCGACATTGTCGACAAGATAAGCTTATTACTTCTCATGATTACAATCTCAGCATTCATTCATCTAAGCTGGATGATGGCAAAGCAATGATTAAAGAGCATAAGAAGCAGGTTGAGGAAAGTAGGGATAGGAGAGTTCATGATCGGAATGAGAAAGAACCTGATCTTTCTAACAACAGGGGCTTAAAATGTGTTCCCTACAAAAAAAGGGCAGAAGCTCTTACGCTAACTTCTGACTTTCCTTCTTATGATTACAAAGATACCTTAAAGGATGGGTTCCTTGCCAATGTCCTAAGTAAAAAGTTGTTCGTTTCAGAATCATTTAATAGTGATGGTCAATTATTCAGATCATCAAAGTTGGAAGACAAAGATAGAGACCAGAAGCGTGAGGTTCGTGTGTCTAAAGAGAGGGAAGAAAACGATGAGAAATACCCATGGATATCAATTCTTGAACTTGACCTCAGAGATTGTGAACCTAGTAATCCCAGCTACCGGCGTCTTCCTGAAGATGTACTGAACTTATTCTTCTTTCTTGTATGGCCTTGTTAA 2376 0.4457 MDGDQETSVAASSSSVTPKKKKNGSIRSIFMHADPLDWFLMILGLVGSIGDGFTTPLVLLISSRLMNNIGSGPTLDPNAFTHSINKGYCWTRTGERQAARMRARYLKAVLRQDVAYFDLHVTSTSEVIASVSNDSLVIQDAIAEKVPNFLMNVFMFIGSYIAAFAMLWRLAIVGFPFVVLLVIPGLLYGRTLMGLARKIREEYNHAGTVAEQAISSIRTVYSFVRECKTIAAFSDALQGSVKLGLKQGLAKGLAIGSNGIVFAIWSFMSYYGSTLVMYHGAQGGTVFAVGAAIAVGGLSLGAALSNMKYFSDASTAGERIMEGYDTQTEQLKTQQDDVVPAPSSISNRDMNNTSSRRLSLVSRSSSANSMARNPASVADEDDGHRHVTEDQKFPVPSFRRLLALNLPEWKQAIMGCTSAVLFGAVQPLILVSLANFFDTNMKRTDDFNGQSHDHGGGGNGGGNIGGEARAASQNLTDPYPLFYVKLVKQAFQNQTEKFDMFVAIIRDFRAQRIDIVGLTESVKELFKGHNHLISGFNVFLLKGYKITPDEYGAPPKKVVAREEALGFLGKINVLLSQKRLQNEDHALQSFRDTMKLFHAGRKDVTEVYMERHCRQDKLITSHDYNLSIHSSKLDDGKAMIKEHKKQVEESRDRRVHDRNEKEPDLSNNRGLKCVPYKKRAEALTLTSDFPSYDYKDTLKDGFLANVLSKKLFVSESFNSDGQLFRSSKLEDKDRDQKREVRVSKEREENDEKYPWISILELDLRDCEPSNPSYRRLPEDVLNLFFFLVWPC 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1578 791 Gene3D ABC transporter type 1, transmembrane domain 75 458 IPR036640 GO:0005524|GO:0016020
Lele05g1578 791 CDD ABC_6TM_Pgp_ABCB1_D1_like 41 320 - -
Lele05g1578 791 MobiDBLite consensus disorder prediction 447 469 - -
Lele05g1578 791 PANTHER ABC TRANSPORTER B FAMILY 5 334 - -
Lele05g1578 791 Coils Coil 791 791 - -
Lele05g1578 791 ProSiteProfiles PAH domain profile. 469 543 IPR003822 GO:0006355
Lele05g1578 791 SUPERFAMILY PAH2 domain 473 540 IPR036600 GO:0006355
Lele05g1578 791 Pfam Paired amphipathic helix repeat 496 540 IPR003822 GO:0006355
Lele05g1578 791 MobiDBLite consensus disorder prediction 643 670 - -
Lele05g1578 791 SUPERFAMILY ABC transporter transmembrane region 27 325 IPR036640 GO:0005524|GO:0016020
Lele05g1578 791 Pfam ABC transporter transmembrane region 86 289 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele05g1578 791 Gene3D Paired amphipathic helix 481 540 IPR036600 GO:0006355
Lele05g1578 791 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 88 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele05g1578 791 MobiDBLite consensus disorder prediction 331 391 - -
Lele05g1578 791 MobiDBLite consensus disorder prediction 1 21 - -
Lele05g1578 791 MobiDBLite consensus disorder prediction 643 667 - -
Lele05g1578 791 FunFam Paired amphipathic helix protein Sin3 480 540 - -
Lele05g1578 791 MobiDBLite consensus disorder prediction 331 373 - -
Lele05g1578 791 Coils Coil 633 660 - -
Lele05g1578 791 MobiDBLite consensus disorder prediction 377 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1578 Lele-ChrLele05 10123017 10134380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1578 71 342 Calmodulin-binding Proteins AT2G36910 23.077 2.40e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele05g1578 ABC_membrane 1.7e-38 CL0241