Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1575 ATGGGAAAGGAGGGCTGCTTCTGAACTGTTGTGGTCGGAGCTCCAACTTGTAGGCTTGAATTTCCAACGGAGTTATGTCAACCTGCCCCTCTTGTGCAAGATCTCCAAACTGCTCTGTTAAACCCAGCATCTCCGGGGCATCATGCAAAAAGATTCAAGGAAGCTGCTTTAACCTTCAAAACAGCAGGGGCCTTGAACATGCTAAAGATGTTCACTGACTCATTGGCCAGAATGCTGCACTGTGATCTTCCATTTCTGTTGTATGAAGAATCCCAGTTTCTCCTGTGCAAAATTAGAGCAAATCGAAAGTCTTCAGGTGGTCGCTCGGTCCCGCTATTCCGATTGCATCGTTCGAAGGATCTTCCTCAGCTAGCGTCTCGCTCCACGCTTTTTTGGATATGTCTTCGTCTGTTCCTCAAGAATCTGATCCCATCCCACATATCTACTCCCGGAAAGACAAGTCACTTGGATTACTCAGCTCCAAGTAAACCCTCTTTTCAACTTTCGGATTTATTGGAGTTTGAATCTTGTCCTTTTTCGTTTTCTGGAGCTTTTTATGTTAATTTGAAGATGATTTATTTGCATTCAGCTTCTTCAAGCTATATAACTGCGAAGTTACAAGATAGATATTCGGACAGTCGAATTGGTCCTGCTTTTTCTCGAGATCACGATTTTGATATTAACCACTCACTTGAATTTCCAGGAGTTCAGCGTCGCCGCATGTATGATGTAGTCAACATATTGGAGACTGTCGGAATTGTGGCAAGAAAGGGGAAAAATCTATACCTATGGAAGGGTTTCAGAGAAATTCCTCGAGCTTTGAACGAGCTTAAGGTTGAAATTATCTTGCTTGAAGATGCTGCAAAGATAATGCCAGGCGATGCTCAGAATTCAACTGCCTTGAGAACAAAAGTCAGACGTTTATATGACATTGCAAATGTCCTCTCATCCGTCAATCTGATCGAGAAGCAGGCAAATCATCCCGAGCATAGGAAAACAGCATATAGGTGGCTGGGAGGGAAATCCAGTACAGAATCTGATGGCATCTTGGGTCAAAGTGCATCCAGGAAGAGAGTGTTTGGAGCGGAAATTACAAATTACAGCTTAAAGAGAAATAAAACAGATTCTTCAATGGATTCGCAGTCCCATCGAAAGATTATGCAAGTGTACAAAAAACAGGATGATTTGGAAAATGAATACAGATGTAAAACTTTGGAGCACCCCACTAAATGCAGTTCAAAGGCCATAGACTTTGGCCCTTTTGCTCCTGTCAATTGCAGTGACCCAATTGTAGAGGATAAGTTTGTTGATGGTGTGACAGCTCTAAGAGTGAGCAGTGACCCATCGTGGAAGTCGTGGCTTGTTGAAGCAGCAGCGCGGCAACAGATGTCTTGA 1395 0.4337 MGKEGCFXTVVVGAPTCRLEFPTELCQPAPLVQDLQTALLNPASPGHHAKRFKEAALTFKTAGALNMLKMFTDSLARMLHCDLPFLLYEESQFLLCKIRANRKSSGGRSVPLFRLHRSKDLPQLASRSTLFWICLRLFLKNLIPSHISTPGKTSHLDYSAPSKPSFQLSDLLEFESCPFSFSGAFYVNLKMIYLHSASSSYITAKLQDRYSDSRIGPAFSRDHDFDINHSLEFPGVQRRRMYDVVNILETVGIVARKGKNLYLWKGFREIPRALNELKVEIILLEDAAKIMPGDAQNSTALRTKVRRLYDIANVLSSVNLIEKQANHPEHRKTAYRWLGGKSSTESDGILGQSASRKRVFGAEITNYSLKRNKTDSSMDSQSHRKIMQVYKKQDDLENEYRCKTLEHPTKCSSKAIDFGPFAPVNCSDPIVEDKFVDGVTALRVSSDPSWKSWLVEAAARQQMS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1575 464 SUPERFAMILY "Winged helix" DNA-binding domain 281 339 IPR036390 -
Lele05g1575 464 SMART E2F_TDP_2 195 266 IPR003316 GO:0005667|GO:0006355
Lele05g1575 464 SMART E2F_TDP_2 268 339 IPR003316 GO:0005667|GO:0006355
Lele05g1575 464 Pfam E2F/DP family winged-helix DNA-binding domain 284 339 IPR003316 GO:0005667|GO:0006355
Lele05g1575 464 Pfam E2F/DP family winged-helix DNA-binding domain 222 266 IPR003316 GO:0005667|GO:0006355
Lele05g1575 464 Gene3D - 269 341 IPR036388 -
Lele05g1575 464 Gene3D - 189 268 IPR036388 -
Lele05g1575 464 PANTHER TRANSCRIPTION FACTOR E2F 235 278 IPR015633 GO:0000978|GO:0006357
Lele05g1575 464 SUPERFAMILY "Winged helix" DNA-binding domain 215 267 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1575 Lele-ChrLele05 10105439 10111810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1575 280 457 E2F-DP Transcription Factor Family AT3G01330 39.394 1.53e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lele05g1575 E2F_TDP 1.7e-11 CL0123