Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1570 ATGGCGACGAATAGGTTCGTGTGCGAGATATGCAACAAGGGGTTTCAGAGGGACCAGAATCTACAGCTGCACAGAAGAGGACACAATCTGCCATGGAAGCTGAGGCAAAGGCCCAGCACGGAGGTGAAGAAGAGGGTGTACGTGTGCCCTGAGCCCTCGTGCGTGCACCACAACCCAGCTCGAGCACTCGGAGACCTCACAGGGATCAAGAAGCATTACAGCAGGAAGCATGGCGAGAAGAAGTGGAAGTGTGATAAATGCTCCAAAAGATACGCTGTCCAATCTGACTGGAAGGCCCACCAAAAAACCTGCGGTACCAGAGAATACAAATGCGATTGCGGCACCATTTTTTCCAGGAGAGATAGCTTCATCACCCACAGGGCTTTTTGTGACGCTTTAACTGAAGAAAACAACAGAATGAACCAAGGATTAAGCAGCGGCTTGCAATCAAACTTGCAAACTCAGGTGCCAGCTGGTCTCATGCCCACAATGCCCCTCACCACCTCCTCCGACCTCAACCACCCACTCCGGTCCCTCTCTCAGGACCTTGGCCCAATCCCATTTAAGCCCATGAGCATGAGCGGGACCATGTTCTCAGAAACATCCGGATCCCTCTTCTCTGGCCCAAAGCCCATCTCTCCCTCCTCCTCCTCCGCGCTCTCCTCTCCCACTTTCGGTTACTTCCAGGACAGCAAAAATATGGGCCCAACGATTTCTGGGTCGGCCCAAATGTCTGCAACGGCTTTGTTACAGAAAGCGGCCCAAATGGGTGCTACCGCAAGCAACAACAGCATCAACTCTCCCATGACGCAAAAGAACTTGGTCACTAGTATGGCTGGTCCTGATCATAATAATGCCTCTGGTTCCATTAGTAAACCACCATTTTCCGCTTCTGAACCTTCCTCCTTCGATCACTTCCAATCCAACGTGGCTGGGATTAGTGGCAGTGGTGGAACACTCACCAATCAACTGTTTCAGAGAGTCCCACAAGAAATTTCAGAACTGTTTGACGCTACTGATGGTGCTGCTACTGGATCTGCAATTTCTGGTATGGGTATGTTCAGCCAGATTTTCCTTGCAAGTGATCATCAGAACCCAGCAGGATTGATGATGAAAAACCACGTGGAACGAGACAACGGTACCACCAGTTCAGGTTTGATAATGCATGGGAGAGATGTAGGAGAAGAGAATCCAATGGGGCCAAATATGGCGACGGTTCATGATTTCTTGGGTGTCGGGGGTTCCGCGAATTTTCATGAACCAGAGCAACAAAGGTTGGAGTTAGACGCCATGAATCTTCAGAGAGTATCAGTTATGAATCATCACTTTCAACACCATCTTCCTCATGGTGATTCACCTTTGGATAAACCCATTTGGGATGTTTGA 1386 0.4971 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRPSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRMNQGLSSGLQSNLQTQVPAGLMPTMPLTTSSDLNHPLRSLSQDLGPIPFKPMSMSGTMFSETSGSLFSGPKPISPSSSSALSSPTFGYFQDSKNMGPTISGSAQMSATALLQKAAQMGATASNNSINSPMTQKNLVTSMAGPDHNNASGSISKPPFSASEPSSFDHFQSNVAGISGSGGTLTNQLFQRVPQEISELFDATDGAATGSAISGMGMFSQIFLASDHQNPAGLMMKNHVERDNGTTSSGLIMHGRDVGEENPMGPNMATVHDFLGVGGSANFHEPEQQRLELDAMNLQRVSVMNHHFQHHLPHGDSPLDKPIWDV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1570 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Lele05g1570 461 Gene3D Classic Zinc Finger 2 29 - -
Lele05g1570 461 FunFam Zinc finger protein MAGPIE 2 29 - -
Lele05g1570 461 SMART c2h2final6 47 77 IPR013087 -
Lele05g1570 461 SMART c2h2final6 6 28 IPR013087 -
Lele05g1570 461 SMART c2h2final6 82 102 IPR013087 -
Lele05g1570 461 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lele05g1570 461 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Lele05g1570 461 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
Lele05g1570 461 Gene3D Classic Zinc Finger 61 140 - -
Lele05g1570 461 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 424 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1570 Lele-ChrLele05 10073101 10075456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1570 1 258 IDZ Gene Family AT1G03840 49.231 5.94e-95 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g1570 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1570 05 10073101 10075456 Lele05g1570 05 10073101 10075456 ECH
Lele05g1570 05 10073101 10075456 Lele07g1627 07 10075887 10078476 hybridization