Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1567 ATGGAGTTGTACGGTCGGAACCCGGATAGGAATGGGTCACAACTGGGTAATCAATCTGAATGGCACCGATCAGGCGGCGAAACTGGGCTTAAAGAATCGGTGTGGCACTTAACCATCGGCTGCAGCGAATCTTACCCGGAGCGACCCGGCGTACCCAATTGTGTATATTACATGCGAACCGGGTTCTGTGGATACGGTAGCAGGTGCCGTTACCATCATCCTCATGATCGCGCCGCGGTTGCAGCAGCTGTGAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAACCTTCATGTCAGTATTATTTAAAAACGGGAACCTGCAAATTTGGTGCATCATGTAGATTTCACCATCCAAAACATGGAGGGGGATCATTAAATCAAGCTCCACTAAATATTTATGGATACCCATTACGCCTGGGTGAGAAAGAATGCTCCTACTATTTGAAGACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTAATCCAGCTGGCACATCAATGCCAGGATCGGCACCTCAATTTTATCAACAGGTGCTGTCTCCTACTGTCCCCCTTGCTGAACAGTATGGGGGTGCATCCAACAGTTTGAGAGTTGCTAGGCCTTCAATATTGCCTGGTTCATATGTGCAGGGTGCTTATGGTCCTGTCCTTCTTTCTCCAGGGGTTGTTCCCTTTCCTGGATGGAGTCCTTATACGGCACCTTTGAGCCCTGTGTTATCTCCTGGTGCTCAATCTGCTGTTGGGACTACTCCTCTGTATGGAGTGACCCAATTGTCTTCATCAACATCAGCTTTTGCTAGACCATATACTCCTCTTCCTTCTATTACTGGACTTTCAGTCAGTGGCTTGAAGGAACAAATATTTCCTGAAAGACCCGGTGAACCTGAATGCCAATACTATTTGAGAACAGGGGACTGCAAATATGGATTGGCATGCCGATATCATCATCCCAGGGACCAGACTGTCCATCCACTTCTGAGCCCTATTGGTCTTCCTTTATGTCCGTATGCTTGA 1029 0.4801 MELYGRNPDRNGSQLGNQSEWHRSGGETGLKESVWHLTIGCSESYPERPGVPNCVYYMRTGFCGYGSRCRYHHPHDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCRFHHPKHGGGSLNQAPLNIYGYPLRLGEKECSYYLKTGQCKFGITCKFHHPNPAGTSMPGSAPQFYQQVLSPTVPLAEQYGGASNSLRVARPSILPGSYVQGAYGPVLLSPGVVPFPGWSPYTAPLSPVLSPGAQSAVGTTPLYGVTQLSSSTSAFARPYTPLPSITGLSVSGLKEQIFPERPGEPECQYYLRTGDCKYGLACRYHHPRDQTVHPLLSPIGLPLCPYA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1567 342 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Lele05g1567 342 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Lele05g1567 342 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Lele05g1567 342 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Lele05g1567 342 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Lele05g1567 342 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Lele05g1567 342 PANTHER PROTEIN PHOSPHATASE RELATED 40 341 - -
Lele05g1567 342 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 74 IPR000571 GO:0046872
Lele05g1567 342 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Lele05g1567 342 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 165 IPR000571 GO:0046872
Lele05g1567 342 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Lele05g1567 342 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Lele05g1567 342 Gene3D - 40 87 - -
Lele05g1567 342 Gene3D - 92 175 - -
Lele05g1567 342 Gene3D - 292 342 - -
Lele05g1567 342 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Lele05g1567 342 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Lele05g1567 342 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Lele05g1567 342 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Lele05g1567 342 MobiDBLite consensus disorder prediction 10 24 - -
Lele05g1567 342 MobiDBLite consensus disorder prediction 1 26 - -
Lele05g1567 342 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1567 Lele-ChrLele05 10038717 10041238 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1567 1 342 C2H2 Transcription Factor Family AT5G18550 49.307 1.25e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele05g1567 zf-CCCH 3.2e-09 CL0537