Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1565 ATGGAGCTGTACGGTCGGAACCCGGCTTGGAATGGGTCTCAACCGGGTAATCAATCTGAATGGCCCCTATCTGGCGCCGAAACTGGGCTCGAAGAATCGATGTGGAACTTAACCATCGGTGGCAGCGAATCTTACCCGGAGCGACCTGGCGTACCTAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATACGGTTACAGGTGCCGTTACAATCATCCTCGTGATCGTGCCGCGGTTGCAGCAGCTGTGAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAACCTTCATGTCAGTATTATTTAAAAACGGGAACCTGCAAATTTGGTGCATCCTGTAAATTTCACCATCCAAAGCACGGAGGTGGATCATTAAGTCAAGCTCCATCAAATATTTATGGATACCCGTTACGTCCGGGTGAGAAAGAATGCTCCTACTATTTGAAGACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTAATCCAGCTGGCACATCAATGCCAGCATCAGCACCTCATTTTTATCAACAGGTGCAGTCTCCTACTGTCCCTCTAGCTGAACAGTATGGGGGGGCATCCAACAGTATGAGAGTGGCTAGGCCTTCAATATTGCCTGGTTCATATGTGCAAGGGGCTTACGGTCCTGTCCTTGTTTCTCCTGGGGTTGTTCCCTTTCCGGGTTGGAGTCCTTATACGGCACCTTTGAGTCCTGTGTTATCTCCTGGTGCCCAATCTGCTGTGGCTACTTCTCTGTATGGAATGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCATATACTCCACTTCCATCTACTACTGGCCTTTCAGGCAGTGGCCTGAAGGAACCAATATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATATGGATTAGCATGTCGATATCATCATCCCAGGGACCGGACCATGAACCGGCCACTTCTCAGCCCCATTGGTCTTCCTTTACGTCCGGGGGTGCAACCTTGTGTTTTTTACTTACAAAACGGGCATTGCAAGTTTGGCTCCACTTGCAAATTTGACCATCCTTTAGTGTCGGTGAGATACAGTCCATCAGCGTCCTCTCTCACTGATATGCCAGTAACTCCATACCCTGTTGGATCTTTGCTGTCTACCCTGGCTCCCTCGACAACATCTTCAGAGCTTCGGCCTGAACTGATGTCAGGCTCAGAAGTGGAATCTTTTTCTACTAGAATGCCATCCTCTGGAAATGGATCAAGCAATTCTGTCAGTTTAATTTTCTCACAAGGTGGAACCGTCTCTCTTTCTGATGTGCAACTCTCAAGTCAAAGCCCTACTCCTTTAAGCAATAGCAGAAACACTAGACAAAGTGGCGACATACGATGA 1413 0.4812 MELYGRNPAWNGSQPGNQSEWPLSGAETGLEESMWNLTIGGSESYPERPGVPNCVYYMRTGFCGYGYRCRYNHPRDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPSNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPNPAGTSMPASAPHFYQQVQSPTVPLAEQYGGASNSMRVARPSILPGSYVQGAYGPVLVSPGVVPFPGWSPYTAPLSPVLSPGAQSAVATSLYGMTQLSSSTSAFARPYTPLPSTTGLSGSGLKEPIFPERPGEPECQYYLRTGDCKYGLACRYHHPRDRTMNRPLLSPIGLPLRPGVQPCVFYLQNGHCKFGSTCKFDHPLVSVRYSPSASSLTDMPVTPYPVGSLLSTLAPSTTSSELRPELMSGSEVESFSTRMPSSGNGSSNSVSLIFSQGGTVSLSDVQLSSQSPTPLSNSRNTRQSGDIR 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1565 470 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Lele05g1565 470 SUPERFAMILY CCCH zinc finger 299 324 IPR036855 GO:0046872
Lele05g1565 470 Gene3D - 93 177 - -
Lele05g1565 470 Gene3D - 294 377 - -
Lele05g1565 470 Gene3D - 43 89 - -
Lele05g1565 470 SUPERFAMILY CCCH zinc finger 341 366 IPR036855 GO:0046872
Lele05g1565 470 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Lele05g1565 470 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Lele05g1565 470 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Lele05g1565 470 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Lele05g1565 470 SMART c3hfinal6 339 366 IPR000571 GO:0046872
Lele05g1565 470 MobiDBLite consensus disorder prediction 445 470 - -
Lele05g1565 470 MobiDBLite consensus disorder prediction 397 432 - -
Lele05g1565 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Lele05g1565 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 297 322 IPR000571 GO:0046872
Lele05g1565 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Lele05g1565 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Lele05g1565 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 341 365 IPR000571 GO:0046872
Lele05g1565 470 MobiDBLite consensus disorder prediction 1 24 - -
Lele05g1565 470 PANTHER PROTEIN PHOSPHATASE RELATED 39 387 - -
Lele05g1565 470 ProSiteProfiles Zinc finger C3H1-type profile. 339 367 IPR000571 GO:0046872
Lele05g1565 470 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
Lele05g1565 470 MobiDBLite consensus disorder prediction 10 24 - -
Lele05g1565 470 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Lele05g1565 470 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Lele05g1565 470 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Lele05g1565 470 SUPERFAMILY CCCH zinc finger 141 166 IPR036855 GO:0046872
Lele05g1565 470 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1565 Lele-ChrLele05 10031826 10035540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1565 1 419 C2H2 Transcription Factor Family AT5G18550 51.591 2.15e-134 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele05g1565 zf-CCCH 5.2e-08 CL0537