Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1558 ATGGAAGACCCTTCAACGCAAAACAGAGAGCACTTTGGAATGTTGCAGTATGGATGCGATCACTACAAGAGAAGGTGCAAAATTCGAGCTCCGTGCTGTGACCAGACCTTCCCATGTCGCCACTGCCACAACGAGGCCATGAGCTCGCTTGACAACCCCAAAGAGCGCCATGAACTGGTCAGGCGTGATGTTAAGCAGGTTATATGTTCAGTCTGTGATGCTGAGCAGGAGGTTGCCAAAGTGTGTTATAATTGTGGTGTCAACATGGGAGAATATTATTGTGAGATTTGCAAATTCTATGACGATGATACAGATAAAGGGCAATTCCATTGCGAGGAATGTGGTATTTGCAGGGTTGGTGGTCGTGATAACTTCTTTCATTGTCAGAAATGCGGATCATGCTATGCCGTGGGCCTGAAAAATAAACACTTCTGTGTAGAGAACTCAATGAAGAGCCACTGCCCTGTCTGCTATGAGTATCTATTTGATTCGATTAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGCATGCTTTCGAGAGATGGCAACCTATCAGTACCGTTGTCCTGTTTGCTTGAAGTCAATATTCAATATGCCAGAGGATTGGAGAAATCTAGATCTTGAGATTGAAGCTGTCCCGATGCCTCAGGAGTATAAGACTGAGGTCTCGATTCTGTGCAATGATTGCAATACCACCTGCGAAGTGTCGTTTCACGTTTTAGGTCACAAGTGTAAACAGTGCGGTTCCTACAACACCCGTAGGATTTCAACACCTGAACATAAATGA 798 0.4461 MEDPSTQNREHFGMLQYGCDHYKRRCKIRAPCCDQTFPCRHCHNEAMSSLDNPKERHELVRRDVKQVICSVCDAEQEVAKVCYNCGVNMGEYYCEICKFYDDDTDKGQFHCEECGICRVGGRDNFFHCQKCGSCYAVGLKNKHFCVENSMKSHCPVCYEYLFDSIKGTTIMKCGHTMHMACFREMATYQYRCPVCLKSIFNMPEDWRNLDLEIEAVPMPQEYKTEVSILCNDCNTTCEVSFHVLGHKCKQCGSYNTRRISTPEHK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1558 265 Pfam Zinc-ribbon 200 257 IPR039512 -
Lele05g1558 265 SUPERFAMILY CHY zinc finger-like 16 88 IPR037274 GO:0008270
Lele05g1558 265 SUPERFAMILY Zinc hairpin stack 90 147 IPR037275 -
Lele05g1558 265 ProSiteProfiles Zinc finger CTCHY-type profile. 89 153 IPR017921 -
Lele05g1558 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 225 IPR013083 -
Lele05g1558 265 ProSiteProfiles Zinc finger CHY-type profile. 12 87 IPR008913 GO:0008270
Lele05g1558 265 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 11 263 - -
Lele05g1558 265 SUPERFAMILY RING/U-box 151 203 - -
Lele05g1558 265 ProSiteProfiles Zinc finger RING-type profile. 154 195 IPR001841 -
Lele05g1558 265 Pfam CHY zinc finger 19 99 IPR008913 GO:0008270
Lele05g1558 265 SMART ring_2 154 195 IPR001841 -
Lele05g1558 265 Pfam Ring finger domain 153 195 IPR001841 -
Lele05g1558 265 Gene3D - 226 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1558 Lele-ChrLele05 9980874 9983956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1558 17 261 C2H2 Transcription Factor Family AT3G18290 42.460 4.55e-56 192