Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1557 ATGAGTGATTCTCCGAAGCACCCACATCTACCGGATAACGATCAAGCACCGAAAGCTCAAAGGCCATGCGACTACTGTGGCTATTCCACTGGTATTCTCTACTGTCGAGCTGATTCTGCCAAGCTGTGTTTCTCTTGTGATCGTGAAGTTCACTCTACCAACCAACTCTTCTCGAAGCACACTCGAGCTCTGCTCTGTGATGCCTGCAACGAATCGCCGGCCACAATACTCTGTTCTACCGAAAGCTCCGTTTTCTGCCAGAATTGTGATTGGGAACGGCACAACCTTTCGATGCCTTTGGTGCACGATAGGAGGCCACTTGAGGGCTTCACTGGGTGTCCTTCCGTGAGTGAGTTGTTATCGATTCTCGGTTTTGAAGATTTGGGCAAGAAAGCCCTGTTTTCGACTGAGGATTGTGGAGGATGTGGCGGCACCGGGGGCGATGGGTTAGTGGGATCTGAGCTTGACGAGGGCCTTTCGGATTTGTTTGTATGGGATGCTCCTGCTGTTGTTAGCCTTGACGATTTGATAACTTCTACAAGCTCGTCTCATAATTATCAGGCTATGGAGGTTCCTCCTCTACCTAAGAACCGTAAGGCTGCTTGTGGGCTACACAAGGAAGAAATCATTAATCAGCTTCGTGAGCTAGCAAAGTTGGAGCCCAGCTTGAATTTTGGAGATATAGTTACTGAACCACTGATCTCCAAGCACCCTATTGTCCCTGAACAGTATTTACAGTCGGCAAGCTTGTCCACAGGTTTTGAGCATAAATTCGAGGCTGATACTTTTCCTTCATACGAGACAAATGTTTTTGAGGGGCCTAGAGATAGTGAGACTGCAAATCAAGTTGTTCCTCCTAATACTAATACATCGTTGTATAAAGAGGAAGTCCTTGATTTTCATGCAGTTTCCACTGTCTGTGGGAGTCATAACTATCTTAACAATGGTGGACAAGTGCCAAACTCTTTTAACTCCGAAAACTTATCGACCACTCCAAAAGTTGCTTCATATGAGCTGACAAGTCAAGAAAGAGACTCTGCATTATTACGTTACAAGGAGAAGAAGAAAACAAGAAGATATGACAAGCACGTAAGGTATGAATCACGAAAAGTTCGGGCGGAAAGAAGGACAAGAGTGAAGGGTCGTTTTGCCAAGATAGAACCCTGA 1167 0.4584 MSDSPKHPHLPDNDQAPKAQRPCDYCGYSTGILYCRADSAKLCFSCDREVHSTNQLFSKHTRALLCDACNESPATILCSTESSVFCQNCDWERHNLSMPLVHDRRPLEGFTGCPSVSELLSILGFEDLGKKALFSTEDCGGCGGTGGDGLVGSELDEGLSDLFVWDAPAVVSLDDLITSTSSSHNYQAMEVPPLPKNRKAACGLHKEEIINQLRELAKLEPSLNFGDIVTEPLISKHPIVPEQYLQSASLSTGFEHKFEADTFPSYETNVFEGPRDSETANQVVPPNTNTSLYKEEVLDFHAVSTVCGSHNYLNNGGQVPNSFNSENLSTTPKVASYELTSQERDSALLRYKEKKKTRRYDKHVRYESRKVRAERRTRVKGRFAKIEP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1557 388 Pfam CCT motif 344 385 IPR010402 GO:0005515
Lele05g1557 388 ProSiteProfiles Zinc finger B-box type profile. 61 107 IPR000315 GO:0008270
Lele05g1557 388 SMART bboxneu5 18 65 IPR000315 GO:0008270
Lele05g1557 388 SMART bboxneu5 66 107 IPR000315 GO:0008270
Lele05g1557 388 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 22 385 - -
Lele05g1557 388 Pfam B-box zinc finger 64 106 IPR000315 GO:0008270
Lele05g1557 388 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Lele05g1557 388 CDD Bbox1_BBX-like 22 65 - -
Lele05g1557 388 ProSiteProfiles CCT domain profile. 344 386 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1557 Lele-ChrLele05 9972488 9974432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1557 14 359 C2C2-CO-like Transcription Factor Family AT2G47890 39.888 1.14e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele05g1557 CCT 1.5e-14 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2052 13 27655437 27656000 Lele05g1557 05 9972488 9974432 CCT
Lele14g1983 14 25986876 25992603 Lele05g1557 05 9972488 9974432 CCT
Lele15g0354 15 2023155 2023628 Lele05g1557 05 9972488 9974432 CCT
Lele16g0372 16 2038954 2039517 Lele05g1557 05 9972488 9974432 CCT
Lele05g1557 05 9972488 9974432 Lele05g1557 05 9972488 9974432 ECH
Lele05g1557 05 9972488 9974432 Lele07g1613 07 9975712 9979010 hybridization
Lele05g1557 05 9972488 9974432 Lele08g1402 08 8976671 8978607 hybridization