Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1542 ATGTTCAAGGAGTTTGCTCTGGTAGACGAGGTCAACGTCATCAAGGACAAAGTCACTCGCTCCTCTCGAGGTTGTTGCTTCGTGATTTGTCCGTCGAGGCAAGAAGCAGACAAGGCGGTCAATGCGTGTCATAACAAGAAGACACTACCTGGGGCATTGAGTCCATTGCAAGTGAAGTATGCGGATGGCGAGTTGGAAAGACTAGAACACAAACTCTTTATTGGCATGCTTCCAAAGAATGTTTCTGAAGCTGAAGTCTCCGCTCTTTTCTCCAACTATGGAACCATAAAGGATATACAGATTTTGAGAGGTTCTCAGCAAACGAGTAAAGGCTGTGCATTTTTGAAGTATGAAACCAAAGAACATGCCCTTGCTGCTCTGGAGGCAATCAATGGAAAACATAAGATGGAGGGTTCAAGCGTTCCTTTGGTGGTCAAATGGGCAGATACAGAAAAGGAAAGACTAGCTCGGAGGGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTGCCGCATAGTGATTCTCAGCATCAGTCATTGTTTGGAGCCTTGCCAATGGGTTATGTTCCACAATATAATGGATATGGCTATCAGGCTCCTGGGGGTTATGGGCTCATGCCATACCGCCTGCCACCATTGCAGAATCAACCTGGTTACCATAATATGATGCCTCACATGAATCAAGGAAATGCATTGGGTCCTGAATTTGTTCCCAATATGAACCCTAGAAAGTATCCCGTGCCTCCTGGAAGTGTTTATGGTTCTTACCCTGCAGTCCCAGGTATGCAGCATCCCATGGCATATCCGGGAGGAGTGATAAGTCCTAGGCCTGTGAGTAGCTCTCCCGGTTCAGTTTCACCTGCAGGTGGAAGTGGCAACTCTTCTACATCTTCAGGTGCCAATAAAAATTCCAGTAGTCAGGTTGAAGGACCACCTGGTGCCAATCTCTTTATTTATCACATACCTCCTGAATATGGAGATCAAGAGCTGGCAAATGCGTTTCAGCCATTTGGTATGGTTCTGAGTGCCAAAGTGTTTGTGGATAAAGCAACCGGTGTAAGCAAATGTTTTGGGTTTGTAAGTTATGAATCTCCAGAAGCTGCACAAGCCGCCATTAGTATGATGAATGGATTCCAATTAAGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGACAACAAGCAGAATAAGCCTTACTGA 1197 0.4545 MFKEFALVDEVNVIKDKVTRSSRGCCFVICPSRQEADKAVNACHNKKTLPGALSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSNYGTIKDIQILRGSQQTSKGCAFLKYETKEHALAALEAINGKHKMEGSSVPLVVKWADTEKERLARRAQKAQSQASNVPHSDSQHQSLFGALPMGYVPQYNGYGYQAPGGYGLMPYRLPPLQNQPGYHNMMPHMNQGNALGPEFVPNMNPRKYPVPPGSVYGSYPAVPGMQHPMAYPGGVISPRPVSSSPGSVSPAGGSGNSSTSSGANKNSSSQVEGPPGANLFIYHIPPEYGDQELANAFQPFGMVLSAKVFVDKATGVSKCFGFVSYESPEAAQAAISMMNGFQLSGKKLKVQLKRDNKQNKPY 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1542 398 CDD RRM1_2_CELF1-6_like 71 146 - -
Lele05g1542 398 MobiDBLite consensus disorder prediction 269 310 - -
Lele05g1542 398 Gene3D - 1 66 IPR012677 -
Lele05g1542 398 CDD RRM3_CELF1-6 315 387 - -
Lele05g1542 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 63 IPR000504 GO:0003723
Lele05g1542 398 SMART rrm1_1 71 146 IPR000504 GO:0003723
Lele05g1542 398 SMART rrm1_1 314 387 IPR000504 GO:0003723
Lele05g1542 398 SMART rrm1_1 1 59 IPR000504 GO:0003723
Lele05g1542 398 SUPERFAMILY RNA-binding domain, RBD 70 395 IPR035979 GO:0003676
Lele05g1542 398 SUPERFAMILY RNA-binding domain, RBD 1 65 IPR035979 GO:0003676
Lele05g1542 398 MobiDBLite consensus disorder prediction 276 310 - -
Lele05g1542 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 391 IPR000504 GO:0003723
Lele05g1542 398 FunFam RNA-binding protein BRN1 isoform X1 67 159 - -
Lele05g1542 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 150 IPR000504 GO:0003723
Lele05g1542 398 PANTHER RNA BINDING PROTEIN 1 392 - -
Lele05g1542 398 Gene3D - 284 390 IPR012677 -
Lele05g1542 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 385 IPR000504 GO:0003723
Lele05g1542 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 135 IPR000504 GO:0003723
Lele05g1542 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 47 IPR000504 GO:0003723
Lele05g1542 398 FunFam RNA-binding protein BRN1 280 390 - -
Lele05g1542 398 Gene3D - 67 157 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1542 Lele-ChrLele05 9882578 9887143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1542 305 398 Eukaryotic Initiation Factors Gene Family AT1G22760 32.979 2.07e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1542 05 9882578 9887143 Lele05g1542 05 9882578 9887143 ECH
Lele05g1542 05 9882578 9887143 Lele07g1598 07 9885564 9890232 hybridization
Lele05g1542 05 9882578 9887143 Lele08g1387 08 8883548 8888115 hybridization